STONY BROOK MEDICINE

Department of Biomedical Informatics

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Mehdi Damaghi

Department of Biomedical Informatics

Publications

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Symbiotic cancer cell-stroma crosstalk in the acidic tumor microenvironment

Emma Downey, Ana M Forero Pinto, Abigail Booth, Joel Brown, Katarzyna A. Rejniak, Mehdi Damaghi

ORCID match Journal of Evolutionary Biology · 2026 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1093/jeb/voag072

Choose for “Symbiotic cancer cell-stroma crosstalk in the acidic tumor microenvironment”

Neutral Sphingomyelinase-2 Restrains TAZ to Suppress Breast Tumor Growth

Andrew E Resnick, Victoria Franzi, Botheina K Ghandour, Sam B Chiappone, Sébastien Lalanne, Monica E Alexander, Deanna M Peperno, Jowana Obeid, Ishmam Pritam, Ian D Miranda, Nicolas Coant, Michael V. Airola, Mehdi Damaghi, Fabiola N. Velázquez, Y A Hannun, Christopher J. Clarke

ORCID match bioRxiv (Cold Spring Harbor Laboratory) · 2026 · Found in OpenAlex, PubMed

DOI: 10.64898/2026.05.13.724348

Choose for “Neutral Sphingomyelinase-2 Restrains TAZ to Suppress Breast Tumor Growth”

Metabolic plasticity enables cancer adaptation to acidic tumor ecosystems

Raafat Chalar, Naheel Khatri, Jowana Obeid, Joon-Hyun Song, Yujie Xiao, Saiful Samad, A Chen, Andrew E Resnick, K H Karbalaei, Janet Allopenna, Cungui Mao, Christopher J. Clarke, Fabiola Velazquez, Bo Chen, Daniel Canals, Yusuf A. Hannun, Mehdi Damaghi

ORCID match bioRxiv (Cold Spring Harbor Laboratory) · 2026 · Found in OpenAlex, PubMed

DOI: 10.64898/2026.01.14.699600

Choose for “Metabolic plasticity enables cancer adaptation to acidic tumor ecosystems”

Genome-level selection in tumors as a universal marker of resistance to therapy

Erez Persi, Praneeth Sudalagunta, Yuri I. Wolf, Rafael Renatino Canevarolo, Mehdi Damaghi, Kenneth H. Shain, Ariosto S. Silva, Eugene V. Koonin

ORCID match Nature Communications · 2025 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1038/s41467-025-61709-x

Choose for “Genome-level selection in tumors as a universal marker of resistance to therapy”

Eco-evolutionary Guided Pathomics Analysis to Predict DCIS Upstaging.

Yujie Xiao, Manal Elmasry, Ji Dong K. Bai, Andrew Chen, Yuzhu Chen, Brooke Jackson, Joseph Johnson, Robert J. Gillies, Prateek Prasanna, Chao Chen, Mehdi Damaghi

ORCID match bioRxiv : the preprint server for biology · 2025 · Found in OpenAlex, PubMed

DOI: 10.1101/2024.06.23.600274

Choose for “Eco-evolutionary Guided Pathomics Analysis to Predict DCIS Upstaging.”

To modulate or to skip: De-escalating PARP inhibitor maintenance therapy in ovarian cancer using adaptive therapy

Maximilian Strobl, Alexandra Martin, Jeffrey West, Jill Gallaher, Mark Robertson‐Tessi, Robert A. Gatenby, Robert M. Wenham, Philip K. Maini, Mehdi Damaghi, Alexander R.A. Anderson

ORCID match Cell Systems · 2024 · Found in OpenAlex, PubMed

DOI: 10.1016/j.cels.2024.04.003

Choose for “To modulate or to skip: De-escalating PARP inhibitor maintenance therapy in ovarian cancer using adaptive therapy”

Human and bats genome robustness under COSMIC mutational signatures

Joon-Hyun Song, Ying Zeng, Liliana M. Dávalos, Thomas MacCarthy, Mani Larijani, Mehdi Damaghi

ORCID match bioRxiv (Cold Spring Harbor Laboratory) · 2024 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1101/2024.09.05.611453

Choose for “Human and bats genome robustness under COSMIC mutational signatures”

Ecological and evolutionary dynamics to design and improve ovarian cancer treatment

Grace Han, Monica Alexander, Julia Gattozzi, Marilyn Day, Elayna Kirsch, Narges K. Tafreshi, Raafat Chalar, Soraya Rahni, Gabrielle Gossner, W. J. Burke, Mehdi Damaghi

ORCID match Clinical and Translational Medicine · 2024 · Found in OpenAlex, PubMed

DOI: 10.1002/ctm2.70012

Choose for “Ecological and evolutionary dynamics to design and improve ovarian cancer treatment”

Contributors

Somaye Akbari, Rashi Arora, Shivani Bhardwaj, Sayani Bhattacharjee, Prasanthi Chittineedi, Mehdi Damaghi, Rambabu Dandela, Kamal Dua, Siri Chandana Gampa, Sireesha V. Garimella, Monisankar Ghosh, Pushparathinam Gopinath, Garima Gupta, Ashok Kumar Janakiraman, Rama Kadamb, Jennifer M. Kalish, Neha Kanojia, Ananya Kar, Ritu Karwasra, Prashant Kesharwani, Kushagra Khanna, Jatin Kumar, K.R. Manu, Yeganeh Modirrousta, Akshata R. Naik, Snehal Nirgude, Prajakta Oak, Jowana Obeid, Santhi Latha Pandrangi, Rajendra P. Pangeni, Moumita Roy, Rahul Roy, Suchandrima Saha, Amirhossein Sahebkar, Uttara Saran, Nitin Sharma, Surender Singh, Parul Sood, S Ramkanth, Chitra Thakur, Komal Thapa, Apoorva Uboveja, Nitin Verma, Priya Wadgaonkar

ORCID match Elsevier eBooks · 2024 · Found in OpenAlex

DOI: 10.1016/b978-0-443-13209-4.09992-x

Choose for “Contributors”

Supplemental Movie from Defining Cancer Subpopulations by Adaptive Strategies Rather Than Molecular Properties Provides Novel Insights into Intratumoral Evolution

Arig Ibrahim‐Hashim, Mark Robertson‐Tessi, Pedro M. Enríquez‐Navas, Mehdi Damaghi, Yoganand Balagurunathan, Jonathan W. Wojtkowiak, Shonagh Russell, Yoonseok Kam, Mark C. Lloyd, Marilyn M. Bui, Joel S. Brown, Alexander R.A. Anderson, Robert J. Gillies, Robert A. Gatenby

ORCID match · 2023 · Found in OpenAlex

DOI: 10.1158/0008-5472.22418178.v1

Choose for “Supplemental Movie from Defining Cancer Subpopulations by Adaptive Strategies Rather Than Molecular Properties Provides Novel Insights into Intratumoral Evolution”

Supplemental Movie from Defining Cancer Subpopulations by Adaptive Strategies Rather Than Molecular Properties Provides Novel Insights into Intratumoral Evolution

Arig Ibrahim‐Hashim, Mark Robertson‐Tessi, Pedro M. Enríquez‐Navas, Mehdi Damaghi, Yoganand Balagurunathan, Jonathan W. Wojtkowiak, Shonagh Russell, Yoonseok Kam, Mark C. Lloyd, Marilyn M. Bui, Joel S. Brown, Alexander R.A. Anderson, Robert J. Gillies, Robert A. Gatenby

ORCID match · 2023 · Found in OpenAlex

DOI: 10.1158/0008-5472.22418178

Choose for “Supplemental Movie from Defining Cancer Subpopulations by Adaptive Strategies Rather Than Molecular Properties Provides Novel Insights into Intratumoral Evolution”

Supplemental Material from Defining Cancer Subpopulations by Adaptive Strategies Rather Than Molecular Properties Provides Novel Insights into Intratumoral Evolution

Arig Ibrahim‐Hashim, Mark Robertson‐Tessi, Pedro M. Enríquez‐Navas, Mehdi Damaghi, Yoganand Balagurunathan, Jonathan W. Wojtkowiak, Shonagh Russell, Yoonseok Kam, Mark C. Lloyd, Marilyn M. Bui, Joel S. Brown, Alexander R.A. Anderson, Robert J. Gillies, Robert A. Gatenby

ORCID match · 2023 · Found in OpenAlex

DOI: 10.1158/0008-5472.22418181.v1

Choose for “Supplemental Material from Defining Cancer Subpopulations by Adaptive Strategies Rather Than Molecular Properties Provides Novel Insights into Intratumoral Evolution”

Supplemental Material from Defining Cancer Subpopulations by Adaptive Strategies Rather Than Molecular Properties Provides Novel Insights into Intratumoral Evolution

Arig Ibrahim‐Hashim, Mark Robertson‐Tessi, Pedro M. Enríquez‐Navas, Mehdi Damaghi, Yoganand Balagurunathan, Jonathan W. Wojtkowiak, Shonagh Russell, Yoonseok Kam, Mark C. Lloyd, Marilyn M. Bui, Joel S. Brown, Alexander R.A. Anderson, Robert J. Gillies, Robert A. Gatenby

ORCID match · 2023 · Found in OpenAlex

DOI: 10.1158/0008-5472.22418181

Choose for “Supplemental Material from Defining Cancer Subpopulations by Adaptive Strategies Rather Than Molecular Properties Provides Novel Insights into Intratumoral Evolution”

Supplemental Figures 1 through 5 from Neutralization of Tumor Acidity Improves Antitumor Responses to Immunotherapy

Shari Pilon‐Thomas, Krithika N. Kodumudi, Asmaa El-Kenawi, Shonagh Russell, Amy Weber, Kimberly A. Luddy, Mehdi Damaghi, Jonathan W. Wojtkowiak, James J. Mulé, Arig Ibrahim‐Hashim, Robert J. Gillies

ORCID match · 2023 · Found in OpenAlex

DOI: 10.1158/0008-5472.22409493

Choose for “Supplemental Figures 1 through 5 from Neutralization of Tumor Acidity Improves Antitumor Responses to Immunotherapy”

Supplemental Figures 1 through 5 from Neutralization of Tumor Acidity Improves Antitumor Responses to Immunotherapy

Shari Pilon‐Thomas, Krithika N. Kodumudi, Asmaa El-Kenawi, Shonagh Russell, Amy Weber, Kimberly A. Luddy, Mehdi Damaghi, Jonathan W. Wojtkowiak, James J. Mulé, Arig Ibrahim‐Hashim, Robert J. Gillies

ORCID match · 2023 · Found in OpenAlex

DOI: 10.1158/0008-5472.22409493.v1

Choose for “Supplemental Figures 1 through 5 from Neutralization of Tumor Acidity Improves Antitumor Responses to Immunotherapy”

Supplemental Figure Legends from Neutralization of Tumor Acidity Improves Antitumor Responses to Immunotherapy

Shari Pilon‐Thomas, Krithika N. Kodumudi, Asmaa El-Kenawi, Shonagh Russell, Amy Weber, Kimberly A. Luddy, Mehdi Damaghi, Jonathan W. Wojtkowiak, James J. Mulé, Arig Ibrahim‐Hashim, Robert J. Gillies

ORCID match · 2023 · Found in OpenAlex

DOI: 10.1158/0008-5472.22409496

Choose for “Supplemental Figure Legends from Neutralization of Tumor Acidity Improves Antitumor Responses to Immunotherapy”

Supplemental Figure Legends from Neutralization of Tumor Acidity Improves Antitumor Responses to Immunotherapy

Shari Pilon‐Thomas, Krithika N. Kodumudi, Asmaa El-Kenawi, Shonagh Russell, Amy Weber, Kimberly A. Luddy, Mehdi Damaghi, Jonathan W. Wojtkowiak, James J. Mulé, Arig Ibrahim‐Hashim, Robert J. Gillies

ORCID match · 2023 · Found in OpenAlex

DOI: 10.1158/0008-5472.22409496.v1

Choose for “Supplemental Figure Legends from Neutralization of Tumor Acidity Improves Antitumor Responses to Immunotherapy”

Evolvability of cancer-associated genes under APOBEC3A/B selection

Joon-Hyun Song, Liliana M. Dávalos, Thomas MacCarthy, Mehdi Damaghi

ORCID match bioRxiv (Cold Spring Harbor Laboratory) · 2023 · Found in OpenAlex, PubMed

DOI: 10.1101/2023.08.27.554991

Choose for “Evolvability of cancer-associated genes under APOBEC3A/B selection”

Data from Turnover Modulates the Need for a Cost of Resistance in Adaptive Therapy

Maximilian Strobl, Jeffrey West, Yannick Viossat, Mehdi Damaghi, Mark Robertson‐Tessi, Joel S. Brown, Robert A. Gatenby, Philip K. Maini, Alexander R.A. Anderson

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/0008-5472.c.6512662

Choose for “Data from Turnover Modulates the Need for a Cost of Resistance in Adaptive Therapy”

Data from Turnover Modulates the Need for a Cost of Resistance in Adaptive Therapy

Maximilian Strobl, Jeffrey West, Yannick Viossat, Mehdi Damaghi, Mark Robertson‐Tessi, Joel S. Brown, Robert A. Gatenby, Philip K. Maini, Alexander R.A. Anderson

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/0008-5472.c.6512662.v1

Choose for “Data from Turnover Modulates the Need for a Cost of Resistance in Adaptive Therapy”

Data from Neutralization of Tumor Acidity Improves Antitumor Responses to Immunotherapy

Shari Pilon‐Thomas, Krithika N. Kodumudi, Asmaa El-Kenawi, Shonagh Russell, Amy Weber, Kimberly A. Luddy, Mehdi Damaghi, Jonathan W. Wojtkowiak, James J. Mulé, Arig Ibrahim‐Hashim, Robert J. Gillies

ORCID match · 2023 · Found in OpenAlex

DOI: 10.1158/0008-5472.c.6507795.v1

Choose for “Data from Neutralization of Tumor Acidity Improves Antitumor Responses to Immunotherapy”

Data from Neutralization of Tumor Acidity Improves Antitumor Responses to Immunotherapy

Shari Pilon‐Thomas, Krithika N. Kodumudi, Asmaa El-Kenawi, Shonagh Russell, Amy Weber, Kimberly A. Luddy, Mehdi Damaghi, Jonathan W. Wojtkowiak, James J. Mulé, Arig Ibrahim‐Hashim, Robert J. Gillies

ORCID match · 2023 · Found in OpenAlex

DOI: 10.1158/0008-5472.c.6507795

Choose for “Data from Neutralization of Tumor Acidity Improves Antitumor Responses to Immunotherapy”

Data from Defining Cancer Subpopulations by Adaptive Strategies Rather Than Molecular Properties Provides Novel Insights into Intratumoral Evolution

Arig Ibrahim‐Hashim, Mark Robertson‐Tessi, Pedro M. Enríquez‐Navas, Mehdi Damaghi, Yoganand Balagurunathan, Jonathan W. Wojtkowiak, Shonagh Russell, Yoonseok Kam, Mark C. Lloyd, Marilyn M. Bui, Joel S. Brown, Alexander R.A. Anderson, Robert J. Gillies, Robert A. Gatenby

ORCID match · 2023 · Found in OpenAlex

DOI: 10.1158/0008-5472.c.6510057

Choose for “Data from Defining Cancer Subpopulations by Adaptive Strategies Rather Than Molecular Properties Provides Novel Insights into Intratumoral Evolution”

Data from Defining Cancer Subpopulations by Adaptive Strategies Rather Than Molecular Properties Provides Novel Insights into Intratumoral Evolution

Arig Ibrahim‐Hashim, Mark Robertson‐Tessi, Pedro M. Enríquez‐Navas, Mehdi Damaghi, Yoganand Balagurunathan, Jonathan W. Wojtkowiak, Shonagh Russell, Yoonseok Kam, Mark C. Lloyd, Marilyn M. Bui, Joel S. Brown, Alexander R.A. Anderson, Robert J. Gillies, Robert A. Gatenby

ORCID match · 2023 · Found in OpenAlex

DOI: 10.1158/0008-5472.c.6510057.v1

Choose for “Data from Defining Cancer Subpopulations by Adaptive Strategies Rather Than Molecular Properties Provides Novel Insights into Intratumoral Evolution”

Adaptive therapy for ovarian cancer: An integrated approach to PARP inhibitor scheduling

Maximilian Strobl, Alexandra Martin, Jeffrey West, Jill Gallaher, Mark Robertson‐Tessi, Robert A. Gatenby, Robert M. Wenham, Philip K. Maini, Mehdi Damaghi, Alexander R.A. Anderson

ORCID match bioRxiv (Cold Spring Harbor Laboratory) · 2023 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1101/2023.03.22.533721

Choose for “Adaptive therapy for ovarian cancer: An integrated approach to PARP inhibitor scheduling”

Abstract 5694: Adaptive treatment scheduling of PARP inhibitors in ovarian cancer: Using mathematical modeling to assess clinical feasibility and estimate potential benefits

Maximilian Strobl, Alexandra Martin, Christopher M. Gallagher, Mehdi Damaghi, Mark Robertson‐Tessi, Robert A. Gatenby, Robert M. Wenham, Philip K. Maini, Alexander R.A. Anderson

ORCID match Cancer Research · 2023 · Found in OpenAlex

DOI: 10.1158/1538-7445.am2023-5694

Choose for “Abstract 5694: Adaptive treatment scheduling of PARP inhibitors in ovarian cancer: Using mathematical modeling to assess clinical feasibility and estimate potential benefits”

Abstract 4313: A novel gene regulatory network model identifies master regulators in cancer

Praneeth Sudalagunta, Rafael Renatino Canevarolo, Mark B. Meads, Maria Coelho Silva, Xiaohong Zhao, Raghunandan Reddy Alugubelli, Joon-Hyun Song, Erez Persi, Mehdi Damaghi, Kenneth H. Shain, Ariosto Silva

ORCID match Cancer Research · 2023 · Found in OpenAlex

DOI: 10.1158/1538-7445.am2023-4313

Choose for “Abstract 4313: A novel gene regulatory network model identifies master regulators in cancer”

Abstract B009: Integrating mathematical modelling and wet-lab experiments to examine the scope for adaptive treatment scheduling of PARP inhibitors in ovarian cancer

Maximilian Strobl, Mehdi Damaghi, Alexandra Martin, Samantha Byrne, Mark Robertson‐Tessi, Robert A. Gatenby, Robert M. Wenham, Philip K. Maini, Alexander R.A. Anderson

ORCID match Cancer Research · 2022 · Found in OpenAlex

DOI: 10.1158/1538-7445.evodyn22-b009

Choose for “Abstract B009: Integrating mathematical modelling and wet-lab experiments to examine the scope for adaptive treatment scheduling of PARP inhibitors in ovarian cancer”

Turnover Modulates the Need for a Cost of Resistance in Adaptive Therapy

Maximilian Strobl, Jeffrey West, Yannick Viossat, Mehdi Damaghi, Mark Robertson‐Tessi, Joel S. Brown, Robert A. Gatenby, Philip K. Maini, Alexander R.A. Anderson

ORCID match Cancer Research · 2021 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1158/0008-5472.can-20-0806

Choose for “Turnover Modulates the Need for a Cost of Resistance in Adaptive Therapy”

The harsh microenvironment in early breast cancer selects for a Warburg phenotype

Mehdi Damaghi, Jeffrey West, Mark Robertson‐Tessi, Liping Xu, Meghan C. Ferrall‐Fairbanks, Paul A. Stewart, Erez Persi, Brooke L. Fridley, Philipp M. Altrock, Robert A. Gatenby, Peter A. Sims, Alexander R.A. Anderson, Robert J. Gillies

ORCID match Proceedings of the National Academy of Sciences · 2021 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1073/pnas.2011342118

Choose for “The harsh microenvironment in early breast cancer selects for a Warburg phenotype”

Cycling hypoxia selects for constitutive HIF stabilization

Mariyah Pressley, Jill Gallaher, Joel S. Brown, Michal R. Tomaszewski, Punit Borad, Mehdi Damaghi, Robert J. Gillies, Christopher J. Whelan

ORCID match Scientific Reports · 2021 · Found in OpenAlex

DOI: 10.1038/s41598-021-85184-8

Choose for “Cycling hypoxia selects for constitutive HIF stabilization”

Turnover modulates the need for a cost of resistance in adaptive therapy

Maximilian Strobl, Jeffrey West, Yannick Viossat, Mehdi Damaghi, Mark Robertson‐Tessi, Joel S. Brown, Robert A. Gatenby, Philip K. Maini, Alexander R.A. Anderson

ORCID match bioRxiv (Cold Spring Harbor Laboratory) · 2020 · Found in ORCID, OpenAlex

DOI: 10.1101/2020.01.22.914366

Choose for “Turnover modulates the need for a cost of resistance in adaptive therapy”

The Harsh Microenvironment in Early Breast Cancer Selects for a Warburg Phenotype

Mehdi Damaghi, Jeffrey West, Mark Robertson‐Tessi, Liping Xu, Meghan C. Ferrall‐Fairbanks, Paul A. Stewart, Erez Persi, Brooke L. Fridley, Philipp M. Altrock, Robert A. Gatenby, Peter A. Sims, Alexander R.A. Anderson, Robert J. Gillies

ORCID match bioRxiv (Cold Spring Harbor Laboratory) · 2020 · Found in ORCID, OpenAlex

DOI: 10.1101/2020.04.07.029975

Choose for “The Harsh Microenvironment in Early Breast Cancer Selects for a Warburg Phenotype”

T-cells produce acidic niches in lymph nodes to suppress their own effector functions

Hao Wu, Verónica Estrella, Matthew Beatty, Dominique Abrahams, Asmaa El-Kenawi, Shonagh Russell, Arig Ibrahim‐Hashim, Dario Livio Longo, Yana K. Reshetnyak, Anna Moshnikova, Oleg A. Andreev, Kimberly A. Luddy, Mehdi Damaghi, Krithika N. Kodumudi, Smitha Pillai, Pedro M. Enríquez‐Navas, Shari Pilon‐Thomas, Pawel Swietach, Robert J. Gillies

ORCID match Nature Communications · 2020 · Found in OpenAlex

DOI: 10.1038/s41467-020-17756-7

Choose for “T-cells produce acidic niches in lymph nodes to suppress their own effector functions”

Omics integration analyses reveal the early evolution of malignancy in breast cancer

Shamim Sarhadi, Ali Salehzadeh‐Yazdi, Mehdi Damaghi, Nosratollah Zarghami, Olaf Wolkenhauer, Hedayatollah Hosseini

ORCID match bioRxiv (Cold Spring Harbor Laboratory) · 2020 · Found in ORCID, OpenAlex

DOI: 10.1101/2020.04.09.033845

Choose for “Omics integration analyses reveal the early evolution of malignancy in breast cancer”

Mix and Match: Phenotypic Coexistence as a Key Facilitator of Cancer Invasion

Maximilian Strobl, Andrew L. Krause, Mehdi Damaghi, Robert J. Gillies, Alexander R.A. Anderson, Philip K. Maini

ORCID match Bulletin of Mathematical Biology · 2020 · Found in OpenAlex

DOI: 10.1007/s11538-019-00675-0

Choose for “Mix and Match: Phenotypic Coexistence as a Key Facilitator of Cancer Invasion”

Integrative Analysis of Breast Cancer Cells Reveals an Epithelial-Mesenchymal Transition Role in Adaptation to Acidic Microenvironment

Mehdi Sadeghi, Bryce Ordway, Ilyia Rafiei, Punit Borad, Bin Fang, John L. Koomen, Chaomei Zhang, Sean Yoder, Joseph Johnson, Mehdi Damaghi

ORCID match Frontiers in Oncology · 2020 · Found in OpenAlex

DOI: 10.3389/fonc.2020.00304

Choose for “Integrative Analysis of Breast Cancer Cells Reveals an Epithelial-Mesenchymal Transition Role in Adaptation to Acidic Microenvironment”

Cycling hypoxia selects for constitutive HIF stabilization

Mariyah Pressley, Jill Gallaher, Joel S. Brown, Michal R. Tomaszewski, Punit Borad, Mehdi Damaghi, Robert J. Gillies, Christopher J. Whelan

ORCID match bioRxiv (Cold Spring Harbor Laboratory) · 2020 · Found in ORCID, OpenAlex

DOI: 10.1101/2020.10.28.359018

Choose for “Cycling hypoxia selects for constitutive HIF stabilization”

Collagen production and niche engineering: A novel strategy for cancer cells to survive acidosis in DCIS and evolve

Mehdi Damaghi, Hidetoshi Mori, Samantha Byrne, Liping Xu, Tingan Chen, Joseph Johnson, Nathan D. Gallant, Andriy Marusyk, Alexander D. Borowsky, Robert J. Gillies

ORCID match Evolutionary Applications · 2020 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1111/eva.13075

Choose for “Collagen production and niche engineering: A novel strategy for cancer cells to survive acidosis in DCIS and evolve”

Mix & Match: Phenotypic coexistence as a key facilitator of solid tumour invasion

Maximilian Strobl, Andrew L. Krause, Mehdi Damaghi, Robert J. Gillies, Alexander R.A. Anderson, Philip K. Maini

ORCID match bioRxiv (Cold Spring Harbor Laboratory) · 2019 · Found in ORCID, OpenAlex

DOI: 10.1101/750810

Choose for “Mix & Match: Phenotypic coexistence as a key facilitator of solid tumour invasion”

Lymph nodes harbor compartments of substantial acidity

Pawel Swietach, Hao Wu, Verónica Estrella, Pedro M. Enríquez‐Navas, Dominique Abrahams, Arig Ibrahim‐Hashim, Yana K. Reshetnyak, Kimberly A. Luddy, Mehdi Damaghi, Shari Pilon‐Thomas, Robert J. Gillies

ORCID match The FASEB Journal · 2019 · Found in OpenAlex

DOI: 10.1096/fasebj.2019.33.1_supplement.544.21

Choose for “Lymph nodes harbor compartments of substantial acidity”

Lymph Nodes Inhibit T-cell Effector Functions Locally by Establishing Acidic Niches

Hao Wu, Verónica Estrella, Pedro M. Enríquez‐Navas, Asmaa El-Kenawi, Shonagh Russell, Dominique Abrahams, Arig Ibrahim-Hashim, Dario Livio Longo, Yana K. Reshetnyak, Kimberly A. Luddy, Mehdi Damaghi, Smitha Pillai, Matthew Beatty, Shari Pilon‐Thomas, Pawel Swietach, Robert J. Gillies

ORCID match bioRxiv (Cold Spring Harbor Laboratory) · 2019 · Found in OpenAlex

DOI: 10.1101/689604

Choose for “Lymph Nodes Inhibit T-cell Effector Functions Locally by Establishing Acidic Niches”

Collagen Production and Niche Engineering: A Novel Strategy for Cancer Cells to Survive Acidosis and Evolve

Mehdi Damaghi, Samantha Byrne, Liping Xu, Narges K. Tafreshi, Bin Fang, John M. Koomen, Aleksandra Karolak, Tingan Chen, Joseph Johnson, Nathan D. Gallant, Andriy Marusyk, Robert J. Gillies

ORCID match bioRxiv (Cold Spring Harbor Laboratory) · 2019 · Found in OpenAlex

DOI: 10.1101/711978

Choose for “Collagen Production and Niche Engineering: A Novel Strategy for Cancer Cells to Survive Acidosis and Evolve”

Causes, consequences, and therapy of tumors acidosis

Smitha Pillai, Mehdi Damaghi, Yoshinori Marunaka, Enrico P. Spugnini, Stefano Fais, Robert J. Gillies

ORCID match Cancer and Metastasis Reviews · 2019 · Found in OpenAlex

DOI: 10.1007/s10555-019-09792-7

Choose for “Causes, consequences, and therapy of tumors acidosis”

Acidity suppresses T cell function and increases memory T cell development

Hao Wu, Verónica Estrella, Pedro M. Enríquez‐Navas, Dominique Abrahams, Arig Ibrahim‐Hashim, Kimberly A. Luddy, Mehdi Damaghi, Smitha RavindranadhanPillai, Shari Pilon‐Thomas, Pawel Swietach, Robert J. Gillies

ORCID match The FASEB Journal · 2019 · Found in OpenAlex

DOI: 10.1096/fasebj.2019.33.1_supplement.lb596

Choose for “Acidity suppresses T cell function and increases memory T cell development”

Abstract 1140: A new twist on an old strategy: Can the lymph node environment help cancers escape immune surveillance

Verónica Estrella, Pawel Swietach, Kimberly A. Luddy, Dominique Abrahams, Pedro M. Enríquez‐Navas, Yana K. Reshetnyak, Mehdi Damaghi, Robert J. Gillies

ORCID match Cancer Research · 2019 · Found in OpenAlex

DOI: 10.1158/1538-7445.am2019-1140

Choose for “Abstract 1140: A new twist on an old strategy: Can the lymph node environment help cancers escape immune surveillance”

Abstract 1140: A new twist on an old strategy: Can the lymph node environment help cancers escape immune surveillance

Verónica Estrella, Pawel Swietach, Kimberly A. Luddy, Dominique Abrahams, Pedro M. Enríquez‐Navas, Yana K. Reshetnyak, Mehdi Damaghi, Robert J. Gillies

ORCID match Tumor Biology · 2019 · Found in OpenAlex

DOI: 10.1158/1538-7445.sabcs18-1140

Choose for “Abstract 1140: A new twist on an old strategy: Can the lymph node environment help cancers escape immune surveillance”

Systems analysis of intracellular pH vulnerabilities for cancer therapy

Erez Persi, Miquel Duran‐Frigola, Mehdi Damaghi, William Roush, Patrick Aloy, John L. Cleveland, Robert J. Gillies, Eytan Ruppin

ORCID match Nature Communications · 2018 · Found in OpenAlex

DOI: 10.1038/s41467-018-05261-x

Choose for “Systems analysis of intracellular pH vulnerabilities for cancer therapy”

Connecting the Microenvironmental Niche to Treatment Response in Ovarian Cancer

Maximilian Strobl, Matthew Wicker, Vikram Adhikarla, W. Andrew Shockey, Eszter Lakatos, Pantea Pooladvand, R. Schenk, Linggih Saputro, Chandler Gatenbee, Martijn Koppens, S Garcia, Robert M. Wenham, Mehdi Damaghi, Jill Gallaher

ORCID match bioRxiv (Cold Spring Harbor Laboratory) · 2018 · Found in OpenAlex

DOI: 10.1101/452052

Choose for “Connecting the Microenvironmental Niche to Treatment Response in Ovarian Cancer”

Defining Cancer Subpopulations by Adaptive Strategies Rather Than Molecular Properties Provides Novel Insights into Intratumoral Evolution

Arig Ibrahim‐Hashim, Mark Robertson‐Tessi, Pedro M. Enríquez‐Navas, Mehdi Damaghi, Yoganand Balagurunathan, Jonathan W. Wojtkowiak, Shonagh Russell, Yoonseok Kam, Mark C. Lloyd, Marilyn M. Bui, Joel S. Brown, Alexander R.A. Anderson, Robert J. Gillies, Robert A. Gatenby

ORCID match Cancer Research · 2017 · Found in OpenAlex

DOI: 10.1158/0008-5472.can-16-2844

Choose for “Defining Cancer Subpopulations by Adaptive Strategies Rather Than Molecular Properties Provides Novel Insights into Intratumoral Evolution”

Combining radiomics and mathematical modeling to elucidate mechanisms of resistance to immune checkpoint blockade in non-small cell lung cancer

Daryoush Saeed‐Vafa, Rafael Bravo, Jamie Dean, Asmaa El-Kenawi, Nathaniel V. Mon Père, Maximilian Strobl, Charlie J. Daniels, Olya Stringfield, Mehdi Damaghi, Ilke Tunali, Liam Brown, Lee Curtin, Daniel Nichol, Hailee Peck, Robert J. Gillies, Jill Gallaher

ORCID match bioRxiv (Cold Spring Harbor Laboratory) · 2017 · Found in OpenAlex

DOI: 10.1101/190561

Choose for “Combining radiomics and mathematical modeling to elucidate mechanisms of resistance to immune checkpoint blockade in non-small cell lung cancer”

Abstract B51: Tumor cell evolutionary strategies to overcome immune response

Kimberly A. Luddy, Jan Poleszczuk, Arig Ibrahim Hashim, Mehdi Damaghi, Robert J. Gillies, Joel S. Brown, Robert A. Gatenby

ORCID match Cancer Research · 2017 · Found in OpenAlex

DOI: 10.1158/1538-7445.epso16-b51

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Neutralization of Tumor Acidity Improves Antitumor Responses to Immunotherapy

Shari Pilon‐Thomas, Krithika N. Kodumudi, Asmaa El-Kenawi, Shonagh Russell, Amy Weber, Kimberly A. Luddy, Mehdi Damaghi, Jonathan W. Wojtkowiak, James J. Mulé, Arig Ibrahim‐Hashim, Robert J. Gillies

ORCID match Cancer Research · 2016 · Found in OpenAlex

DOI: 10.1158/0008-5472.can-15-1743

Choose for “Neutralization of Tumor Acidity Improves Antitumor Responses to Immunotherapy”

Chronic acidosis in the tumour microenvironment selects for overexpression of LAMP2 in the plasma membrane

Mehdi Damaghi, Narges K. Tafreshi, Mark C. Lloyd, Robert W. Sprung, Verónica Estrella, Jonathan W. Wojtkowiak, David L. Morse, John M. Koomen, Marilyn M. Bui, Robert A. Gatenby, Robert J. Gillies

ORCID match Nature Communications · 2015 · Found in OpenAlex

DOI: 10.1038/ncomms9752

Choose for “Chronic acidosis in the tumour microenvironment selects for overexpression of LAMP2 in the plasma membrane”

Abstract 1265: LAMP2 overexpression in the plasma membrane of breast cancer cells in response of chronic acidosis as a new imaging and therapeutic target

Mehdi Damaghi, Robert W. Sprung, Narges K. Tafreshi, Verónica Estrella, John M. Koomen, David L. Morse, Robert J. Gillies

ORCID match Cancer Research · 2015 · Found in OpenAlex

DOI: 10.1158/1538-7445.am2015-1265

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pH sensing and regulation in cancer

Mehdi Damaghi, Jonathan W. Wojtkowiak, Robert J. Gillies

ORCID match Frontiers in Physiology · 2013 · Found in OpenAlex

DOI: 10.3389/fphys.2013.00370

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Dendrosomes as novel gene porters‐III

Majid Sadeghizadeh, Bijan Ranjbar, Mehdi Damaghi, Leila Khaki, M. N. Sarbolouki, Farhood Najafi, Simak Parsaee, Abed‐Ali Ziaee, Mohammad Massumi, Werner Lubitz, Paul Kudela, Susan Paukner, Ali Karami

ORCID match Journal of Chemical Technology & Biotechnology · 2008 · Found in OpenAlex

DOI: 10.1002/jctb.1891

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