STONY BROOK MEDICINE

Department of Biomedical Informatics

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FACULTY PROFILE · REVIEW PREVIEW

George Teodoro

Department of Biomedical Informatics

Publications

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STEval: A framework for evaluating spatio-temporal crime prediction models

Gabriel Amarante, Matheus Pimenta, Yan Andrade, Matheus Senna, R. Julian Menezes, Antônio Hot Faria, M. Vilas-Boas, Frederico Martins de Paula Neto, João Paulo da Silva, Everton Renato de Sousa, J Da Silva, Wagner Meira, George Teodoro, Leonardo Rocha, Renato Ferreira

ORCID match Engineering Applications of Artificial Intelligence · 2025 · Found in OpenAlex

DOI: 10.1016/j.engappai.2025.112123

Choose for “STEval: A framework for evaluating spatio-temporal crime prediction models”

NACNet: A histology context-aware transformer graph convolution network for predicting treatment response to neoadjuvant chemotherapy in Triple Negative Breast Cancer

Qiang Li, George Teodoro, Yi Jiang, Jun Kong

ORCID match Computerized Medical Imaging and Graphics · 2024 · Found in OpenAlex

DOI: 10.1016/j.compmedimag.2024.102467

Choose for “NACNet: A histology context-aware transformer graph convolution network for predicting treatment response to neoadjuvant chemotherapy in Triple Negative Breast Cancer”

NACNet: A Histology Context-aware Transformer Graph Convolution Network for Predicting Treatment Response to Neoadjuvant Chemotherapy in Triple Negative Breast Cancer

Qiang Li, George Teodoro, Yi Jiang, Jun Kong

ORCID match arXiv (Cornell University) · 2024 · Found in OpenAlex

DOI: 10.48550/arxiv.2411.09766

Choose for “NACNet: A Histology Context-aware Transformer Graph Convolution Network for Predicting Treatment Response to Neoadjuvant Chemotherapy in Triple Negative Breast Cancer”

DuMato: An efficient warp-centric subgraph enumeration system for GPU

Samuel Ferraz, Vinícius Dias, Carlos H. C. Teixeira, Srinivasan Parthasarathy, George Teodoro, Wagner Meira

ORCID match Journal of Parallel and Distributed Computing · 2024 · Found in OpenAlex

DOI: 10.1016/j.jpdc.2024.104903

Choose for “DuMato: An efficient warp-centric subgraph enumeration system for GPU”

A Descriptive and Predictive Analysis Tool for Criminal Data: A Case Study from Brazil

Yan Andrade, Matheus Pimenta, Gabriel Amarante, Antônio Hot Faria, M. Vilas-Boas, João Paulo da Silva, Felipe Ferreira De Oliveira Rocha, J Da Silva, Wagner Meira, George Teodoro, Leonardo Rocha, Renato Ferreira

ORCID match Lecture notes in computer science · 2024 · Found in OpenAlex

DOI: 10.1007/978-3-031-64608-9_10

Choose for “A Descriptive and Predictive Analysis Tool for Criminal Data: A Case Study from Brazil”

Large-scale response-aware online ANN search in dynamic datasets

Guilherme Andrade, Willian Barreiros, Leonardo Rocha, Renato Ferreira, George Teodoro

ORCID match Cluster Computing · 2023 · Found in OpenAlex

DOI: 10.1007/s10586-023-04159-8

Choose for “Large-scale response-aware online ANN search in dynamic datasets”

Large-Scale Response-Aware Online ANN Search in Dynamic Datasets

Guilherme Andrade, Willian Barreiros, Leonardo Rocha, Renato Ferreira, George Teodoro

ORCID match Research Square · 2023 · Found in OpenAlex

DOI: 10.21203/rs.3.rs-3161488/v1

Choose for “Large-Scale Response-Aware Online ANN Search in Dynamic Datasets”

Deep Learning-Based Pathology Image Analysis Enhances Magee Feature Correlation With Oncotype DX Breast Recurrence Score

Hongxiao Li, Jigang Wang, Zaibo Li, Melad Dababneh, Fusheng Wang, Peng Zhao, Geoffrey Smith, George Teodoro, Meijie Li, Jun Kong, Xiaoxian Li

ORCID match Frontiers in Medicine · 2022 · Found in OpenAlex

DOI: 10.3389/fmed.2022.886763

Choose for “Deep Learning-Based Pathology Image Analysis Enhances Magee Feature Correlation With Oncotype DX Breast Recurrence Score”

A spatial attention guided deep learning system for prediction of pathological complete response using breast cancer histopathology images

Hongyi Duanmu, Shristi Bhattarai, Hongxiao Li, Zhan Shi, Fusheng Wang, George Teodoro, Keerthi Gogineni, Preeti Subhedar, Umay Kiraz, Emiel A. M. Janssen, Ritu Aneja, Jun Kong

ORCID match Bioinformatics · 2022 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1093/bioinformatics/btac558

Choose for “A spatial attention guided deep learning system for prediction of pathological complete response using breast cancer histopathology images”

A Spatial Attention Guided Deep Learning System for Prediction of Pathological Complete Response Using Breast Cancer Histopathology Images

Hongyi Duanmu, Shristi Bhattarai, Hongxiao Li, Zhan Shi, Fusheng Wang, George Teodoro, Keerthi Gogineni, Preeti Subhedar, Umay Kiraz, Emiel A. M. Janssen, Ritu Aneja, Jun Kong

ORCID match bioRxiv (Cold Spring Harbor Laboratory) · 2022 · Found in OpenAlex

DOI: 10.1101/2022.05.25.493468

Choose for “A Spatial Attention Guided Deep Learning System for Prediction of Pathological Complete Response Using Breast Cancer Histopathology Images”

Spatial Attention-Based Deep Learning System for Breast Cancer Pathological Complete Response Prediction with Serial Histopathology Images in Multiple Stains

Hongyi Duanmu, Shristi Bhattarai, Hongxiao Li, Chia Cheng Cheng, Fusheng Wang, George Teodoro, Emiel A. M. Janssen, Keerthi Gogineni, Preeti Subhedar, Ritu Aneja, Jun Kong

ORCID match Lecture Notes in Computer Science · 2021 · Found in OpenAlex

DOI: 10.1007/978-3-030-87237-3_53

Choose for “Spatial Attention-Based Deep Learning System for Breast Cancer Pathological Complete Response Prediction with Serial Histopathology Images in Multiple Stains”

Building robust pathology image analyses with uncertainty quantification

Jeremias Gomes, Jun Kong, Tahsin Kurç, Alba Cristina Magalhães Alves de Melo, Renato Cordeiro Ferreira, Joel Saltz, George Teodoro

ORCID match Computer Methods and Programs in Biomedicine · 2021 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1016/j.cmpb.2021.106291

Choose for “Building robust pathology image analyses with uncertainty quantification”

Online multimedia retrieval on CPU–GPU platforms with adaptive work partition

Rafael Martins de Souza, André G. de A. Fernandes, Thiago Teixeira, George Teodoro, Renato Ferreira

ORCID match Journal of Parallel and Distributed Computing · 2020 · Found in OpenAlex

DOI: 10.1016/j.jpdc.2020.10.001

Choose for “Online multimedia retrieval on CPU–GPU platforms with adaptive work partition”

Using Multiple Fickett Bands to Accelerate Biological Sequence Comparisons

Gabriel H. G. Silva, Edans F. O. Sandes, George Teodoro, Alba Cristina Magalhães Alves de Melo

ORCID match Journal of Computational Biology · 2019 · Found in OpenAlex

DOI: 10.1089/cmb.2019.0031

Choose for “Using Multiple Fickett Bands to Accelerate Biological Sequence Comparisons”

Run-time Parameter Sensitivity Analysis Optimizations

Eduardo Scartezini, Willian Barreiros, Tahsin Kurç, Jun Kong, Alba Cristina Magalhães Alves de Melo, Joel Saltz, George Teodoro

ORCID match arXiv (Cornell University) · 2019 · Found in OpenAlex

DOI: 10.48550/arxiv.1910.14548

Choose for “Run-time Parameter Sensitivity Analysis Optimizations”

Optimizing parameter sensitivity analysis of large‐scale microscopy image analysis workflows with multilevel computation reuse

Willian Barreiros, Jeremías Moreira, Tahsin Kurç, Jun Kong, Alba Cristina Magalhães Alves de Melo, Joel Saltz, George Teodoro

ORCID match Concurrency and Computation Practice and Experience · 2019 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1002/cpe.5403

Choose for “Optimizing parameter sensitivity analysis of large‐scale microscopy image analysis workflows with multilevel computation reuse”

Medical Imaging Processing Architecture on ATMOSPHERE Federated Platform

Ignácio Blanquer, Ángel Alberich‐Bayarri, Fabio García-Castro, George Teodoro, André L. S. Meirelles, Bruno Ramos Nascimento, Wagner Meira, António Bettencourt Ribeiro

ORCID match · 2019 · Found in OpenAlex

DOI: 10.5220/0007876705890594

Choose for “Medical Imaging Processing Architecture on ATMOSPHERE Federated Platform”

MASA‐OpenCL: Parallel pruned comparison of long DNA sequences with OpenCL

Marco Figueiredo, Edans F. O. Sandes, Genaína Nunes Rodrigues, George Teodoro, Alba Cristina Magalhães Alves de Melo

ORCID match Concurrency and Computation: Practice and Experience · 2019 · Found in ORCID, OpenAlex

DOI: 10.1002/cpe.5039

Choose for “MASA‐OpenCL: Parallel pruned comparison of long DNA sequences with OpenCL”

Liver steatosis segmentation with deep learning methods

Xiaoyuan Guo, Fusheng Wang, George Teodoro, Alton B. Farris, Jun Kong

ORCID match Proceedings - International Symposium on Biomedical Imaging · 2019 · Found in OpenAlex

DOI: 10.1109/isbi.2019.8759600

Choose for “Liver steatosis segmentation with deep learning methods”

Hardware-Based Fast Hybrid Morphological Reconstruction

Oscar Anacona-Mosquera, Carlos Eduardo da Silva Santos, Felipe R. G. Cabral, Renato Coral Sampaio, George Teodoro, Ricardo Pezzuol Jacobi, Carlos H. Llanos

ORCID match IEEE Design and Test · 2019 · Found in OpenAlex

DOI: 10.1109/mdat.2019.2952339

Choose for “Hardware-Based Fast Hybrid Morphological Reconstruction”

COMPUTER DEEP LEARNING FOR AUTOMATIC IDENTIFICATION OF ECHOCARDIOGRAPHIC VIEWS APPLIED FOR RHEUMATIC HEART DISEASE SCREENING: DATA FROM THE ATMOSPHERE-PROVAR STUDY

Bruno Ramos Nascimento, André L. S. Meirelles, Wagner Meira, Gisele L. Pappa, Maria do Carmo Nunes, Craig Sable, Andrea Beaton, Paulo R. Gomes, Fabio Valério Santos Modesto, George Teodoro, Antônio Luiz Pinho Ribeiro

ORCID match Journal of the American College of Cardiology · 2019 · Found in OpenAlex

DOI: 10.1016/s0735-1097(19)32217-x

Choose for “COMPUTER DEEP LEARNING FOR AUTOMATIC IDENTIFICATION OF ECHOCARDIOGRAPHIC VIEWS APPLIED FOR RHEUMATIC HEART DISEASE SCREENING: DATA FROM THE ATMOSPHERE-PROVAR STUDY”

Tuning for Tissue Image Segmentation Workflows for Accuracy and Performance

Luis F. R. Taveira, Tahsin Kurç, Alba Cristina Magalhães Alves de Melo, Jun Kong, Erich Bremer, Joel Saltz, George Teodoro

ORCID match arXiv (Cornell University) · 2018 · Found in OpenAlex

DOI: 10.48550/arxiv.1810.02911

Choose for “Tuning for Tissue Image Segmentation Workflows for Accuracy and Performance”

Segmentation of Overlapped Steatosis in Whole-Slide Liver Histopathology Microscopy Images

Mousumi Roy, Fusheng Wang, George Teodoro, Miriam B. Vos, Alton B. Farris, Jun Kong

ORCID match Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS · 2018 · Found in OpenAlex

DOI: 10.1109/embc.2018.8512289

Choose for “Segmentation of Overlapped Steatosis in Whole-Slide Liver Histopathology Microscopy Images”

Multi-objective Parameter Auto-tuning for Tissue Image Segmentation Workflows

Luis F. R. Taveira, Tahsin Kurç, Alba Cristina Magalhães Alves de Melo, Jun Kong, Erich Bremer, Joel Saltz, George Teodoro

ORCID match Journal of Imaging Informatics in Medicine · 2018 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1007/s10278-018-0138-z

Choose for “Multi-objective Parameter Auto-tuning for Tissue Image Segmentation Workflows”

Cooperative and out‐of‐core execution of the irregular wavefront propagation pattern on hybrid machines with Intel® Xeon Phi™

Jeremias Gomes, Alba Cristina Magalhães Alves de Melo, Jun Kong, Tahsin Kurç, Joel Saltz, George Teodoro

ORCID match Concurrency and Computation Practice and Experience · 2018 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1002/cpe.4425

Choose for “Cooperative and out‐of‐core execution of the irregular wavefront propagation pattern on hybrid machines with Intel® Xeon Phi™”

Clumped Nuclei Segmentation with Adjacent Point Match and Local Shape based Intensity Analysis for Overlapped Nuclei in Fluorescence In-Situ Hybridization Images

Xiaoyuan Guo, Hanyi Yu, Blair J. Rossetti, George Teodoro, Daniel J. Brat, Jun Kong

ORCID match arXiv (Cornell University) · 2018 · Found in OpenAlex

DOI: 10.48550/arxiv.1808.04795

Choose for “Clumped Nuclei Segmentation with Adjacent Point Match and Local Shape based Intensity Analysis for Overlapped Nuclei in Fluorescence In-Situ Hybridization Images”

Analysis of Cellular Feature Differences of Astrocytomas with Distinct Mutational Profiles Using Digitized Histopathology Images

Mousumi Roy, Fusheng Wang, George Teodoro, Jose Velazqeuz Vega, Daniel J. Brat, Jun Kong

ORCID match Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS · 2018 · Found in OpenAlex

DOI: 10.1109/embc.2018.8513157

Choose for “Analysis of Cellular Feature Differences of Astrocytomas with Distinct Mutational Profiles Using Digitized Histopathology Images”

Dynamic registration for gigapixel serial whole slide images

Blair J. Rossetti, Fusheng Wang, Pengyue Zhang, George Teodoro, Daniel J. Brat, Jun Kong

ORCID match Proceedings - International Symposium on Biomedical Imaging · 2017 · Found in OpenAlex

DOI: 10.1109/isbi.2017.7950552

Choose for “Dynamic registration for gigapixel serial whole slide images”

Cloud-based whole slide image analysis using mapreduce

Hoang Vo, Jun Kong, Dejun Teng, Yanhui Liang, Ablimit Aji, George Teodoro, Fusheng Wang

ORCID match Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) · 2017 · Found in OpenAlex

DOI: 10.1007/978-3-319-57741-8_5

Choose for “Cloud-based whole slide image analysis using mapreduce”

Robust cell segmentation for histological images of Glioblastoma

Jun Kong, Pengyue Zhang, Yanhui Liang, George Teodoro, Daniel J. Brat, Fusheng Wang

ORCID match Proceedings - International Symposium on Biomedical Imaging · 2016 · Found in OpenAlex

DOI: 10.1109/isbi.2016.7493444

Choose for “Robust cell segmentation for histological images of Glioblastoma”

MASA

Edans F. O. Sandes, Guillermo Miranda, Xavier Martorell, Eduard Ayguadé, George Teodoro, Alba Cristina Magalhães Alves de Melo

ORCID match ACM Transactions on Parallel Computing · 2016 · Found in OpenAlex

DOI: 10.1145/2858656

Choose for “MASA”

Large-Scale Microscopy Imaging Analytics for In Silico Biomedicine

Joel Saltz, Fusheng Wang, George Teodoro, Lee Cooper, Patrick Widener, Jun Kong, David A. Gutman, Tony Pan, Sharath R. Cholleti, Ashish Sharma, Daniel J. Brat, Tahsin Kurç

ORCID match · 2016 · Found in OpenAlex

DOI: 10.1201/b14935-3

Choose for “Large-Scale Microscopy Imaging Analytics for In Silico Biomedicine”

A framework for 3D vessel analysis using whole slide images of liver tissue sections

Yanhui Liang, Fusheng Wang, Darren Treanor, Derek Magee, Nick Roberts, George Teodoro, Yangyang Zhu, Jun Kong

ORCID match International Journal of Computational Biology and Drug Design · 2016 · Found in OpenAlex

DOI: 10.1504/ijcbdd.2016.074983

Choose for “A framework for 3D vessel analysis using whole slide images of liver tissue sections”

Liver whole slide image analysis for 3D vessel reconstruction

Yanhui Liang, Fusheng Wang, Darren Treanor, Derek Magee, George Teodoro, Yangyang Zhu, Jun Kong

ORCID match Proceedings - International Symposium on Biomedical Imaging · 2015 · Found in OpenAlex

DOI: 10.1109/isbi.2015.7163845

Choose for “Liver whole slide image analysis for 3D vessel reconstruction”

Efficient Irregular Wavefront Propagation Algorithms on Intel(R) Xeon Phi(TM)

Jeremias M. Gomes, George Teodoro, Alba Cristina Magalhães Alves de Melo, Jun Kong, Tahsin Kurç, Joel Saltz

ORCID match Proceedings. Symposium on Computer Architecture and High Performance Computing · 2015 · Found in OpenAlex

DOI: 10.1109/sbac-pad.2015.13

Choose for “Efficient Irregular Wavefront Propagation Algorithms on Intel(R) Xeon Phi(TM)”

Automated cell segmentation with 3D fluorescence microscopy images

Jun Kong, Fusheng Wang, George Teodoro, Yanhui Liang, Yangyang Zhu, Carol Tucker‐Burden, Daniel J. Brat

ORCID match Proceedings - International Symposium on Biomedical Imaging · 2015 · Found in OpenAlex

DOI: 10.1109/isbi.2015.7164091

Choose for “Automated cell segmentation with 3D fluorescence microscopy images”

Application performance analysis and efficient execution on systems with multi-core CPUs, GPUs and MICs: a case study with microscopy image analysis

George Teodoro, Tahsin Kurç, Guilherme Andrade, Jun Kong, Renato Ferreira, Joel Saltz

ORCID match The International Journal of High Performance Computing Applications · 2015 · Found in OpenAlex

DOI: 10.1177/1094342015594519

Choose for “Application performance analysis and efficient execution on systems with multi-core CPUs, GPUs and MICs: a case study with microscopy image analysis”

A 3D primary vessel reconstruction framework with serial microscopy images

Yanhui Liang, Fusheng Wang, Darren Treanor, Derek Magee, George Teodoro, Yangyang Zhu, Jun Kong

ORCID match Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) · 2015 · Found in OpenAlex

DOI: 10.1007/978-3-319-24574-4_30

Choose for “A 3D primary vessel reconstruction framework with serial microscopy images”

Haggis

Ablimit Aji, George Teodoro, Fusheng Wang

ORCID match · 2014 · Found in OpenAlex

DOI: 10.1145/2676536.2676539

Choose for “Haggis”

Machine-Based Morphologic Analysis of Glioblastoma Using Whole-Slide Pathology Images Uncovers Clinically Relevant Molecular Correlates

Jun Kong, Lee Cooper, Fusheng Wang, Jingjing Gao, George Teodoro, Lisa Scarpace, Tom Mikkelsen, Matthew Schniederjan, Carlos S. Moreno, Joel Saltz, Daniel J. Brat

ORCID match PLoS ONE · 2013 · Found in OpenAlex

DOI: 10.1371/journal.pone.0081049

Choose for “Machine-Based Morphologic Analysis of Glioblastoma Using Whole-Slide Pathology Images Uncovers Clinically Relevant Molecular Correlates”

High-performance computational analysis of glioblastoma pathology images with database support identifies molecular and survival correlates

Jun Kong, Fusheng Wang, George Teodoro, Lee Cooper, Carlos S. Moreno, Tahsin Kurç, Tony Pan, Joel Saltz, Daniel J. Brat

ORCID match Proceedings - 2013 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2013 · 2013 · Found in OpenAlex

DOI: 10.1109/bibm.2013.6732495

Choose for “High-performance computational analysis of glioblastoma pathology images with database support identifies molecular and survival correlates”

Optimizing dataflow applications on heterogeneous environments

George Teodoro, Timothy D. R. Hartley, Ümit V. Çatalyürek, Renato Ferreira

ORCID match Cluster Computing · 2011 · Found in OpenAlex

DOI: 10.1007/s10586-010-0151-6

Choose for “Optimizing dataflow applications on heterogeneous environments”

AARTS

George Teodoro, Alan Sussman

ORCID match · 2011 · Found in OpenAlex

DOI: 10.1145/2000417.2000418

Choose for “AARTS”

Profiling General Purpose GPU Applications

Bruno Rocha Coutinho, George Teodoro, Rafael Sachetto Oliveira, D.O.G. Neto, R.A.C. Ferreira

ORCID match · 2009 · Found in OpenAlex

DOI: 10.1109/sbac-pad.2009.26

Choose for “Profiling General Purpose GPU Applications”

An Efficient and Reliable Scientific Workflow System

Tulio Tavares, Steve Langella, Joel Saltz, George Teodoro, Tahsin Kurç, Renato Ferreira, Dorgival Guedes, Wagner Meira, Ümit V. Çatalyürek, Shannon Hastings, Scott Oster

ORCID match · 2007 · Found in OpenAlex

DOI: 10.1109/ccgrid.2007.20

Choose for “An Efficient and Reliable Scientific Workflow System”

Anthill: A Scalable Run-Time Environment for Data Mining Applications

Renato Ferreira, Wagner Meira, Dorgival Guedes, Lúcia M. A. Drummond, Bruno Cardoso Coutinho, George Teodoro, Tulio Tavares, Raquel Linhares Bello de Araújo, G.T. Ferreira

ORCID match · 2006 · Found in OpenAlex

DOI: 10.1109/cahpc.2005.12

Choose for “Anthill: A Scalable Run-Time Environment for Data Mining Applications”

Load balancing on stateful clustered Web servers

George Teodoro, Tulio Tavares, Bruno Cardoso Coutinho, Wagner Meira, Dorgival Guedes

ORCID match · 2004 · Found in OpenAlex

DOI: 10.1109/cahpc.2003.1250340

Choose for “Load balancing on stateful clustered Web servers”
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