Faculty Publication Review

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Publications

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Serverless OpenHealth at data commons scale—traversing the 20 million patient records of New York’s SPARCS dataset in real-time

Jonas S. Almeida, Janos Hajagos, Joel Saltz, Mary Saltz

Name match · unconfirmed PeerJ · 2019 · Found in PubMed

DOI: 10.7717/peerj.6230

Choose for “Serverless OpenHealth at data commons scale—traversing the 20 million patient records of New York’s SPARCS dataset in real-time”addomitnot mine

Kinomics toolbox-A web platform for analysis and viewing of kinomic peptide array data.

Alex M Dussaq, Timothy Kennell Jr, Nicholas J Eustace, Joshua C Anderson, Jonas S Almeida, Christopher D Willey

Name match · unconfirmed PloS one · 2018 · Found in PubMed

DOI: 10.1371/journal.pone.0202139

Choose for “Kinomics toolbox-A web platform for analysis and viewing of kinomic peptide array data.”addomitnot mine

Towards Generation, Management, and Exploration of Combined Radiomics and Pathomics Datasets for Cancer Research.

Joel Saltz, Jonas S. Almeida, Yi Gao, Ashish Sharma, Erich Bremer, Tammy DiPrima, Mary Saltz, Jayashree Kalpathy–Cramer, Tahsin Kurç

Name match · unconfirmed PubMed · 2017 · Found in PubMed

Choose for “Towards Generation, Management, and Exploration of Combined Radiomics and Pathomics Datasets for Cancer Research.”addomitnot mine

OpenHealth Platform for Interactive Contextualization of Population Health Open Data.

Jonas S. Almeida, Janos Hajagos, Ivan Crnosija, Tahsin Kurç, Mary Saltz, Joel Saltz

Name match · unconfirmed PubMed · 2017 · Found in PubMed

Choose for “OpenHealth Platform for Interactive Contextualization of Population Health Open Data.”addomitnot mine

Isomorphic semantic mapping of variant call format (VCF2RDF).

Emanuel Diego S Penha, Egiebade Iriabho, Alex Dussaq, Diana Magalhães de Oliveira, Jonas S Almeida

Name match · unconfirmed Bioinformatics (Oxford, England) · 2017 · Found in PubMed

DOI: 10.1093/bioinformatics/btw652

Choose for “Isomorphic semantic mapping of variant call format (VCF2RDF).”addomitnot mine

Alignment-free sequence comparison: benefits, applications, and tools.

Andrzej Zielezinski, Susana Vinga, Jonas Almeida, Wojciech M Karlowski

Name match · unconfirmed Genome biology · 2017 · Found in PubMed

DOI: 10.1186/s13059-017-1319-7

Choose for “Alignment-free sequence comparison: benefits, applications, and tools.”addomitnot mine

A Containerized Software System for Generation, Management, and Exploration of Features from Whole Slide Tissue Images

Joel Saltz, Ashish Sharma, Ganesh R Iyer, Erich Bremer, Feiqiao Wang, Alina Jasniewski, Tammy DiPrima, Jonas S. Almeida, Yi Gao, Tianhao Zhao, Mary Saltz, Tahsin Kurç

Name match · unconfirmed Cancer Research · 2017 · Found in PubMed

DOI: 10.1158/0008-5472.can-17-0316

Choose for “A Containerized Software System for Generation, Management, and Exploration of Features from Whole Slide Tissue Images”addomitnot mine

Safe "cloudification" of large images through picker APIs.

Erich Bremer, Tahsin Kurç, Yi Gao, Joel Saltz, Jonas S. Almeida

Name match · unconfirmed PubMed · 2016 · Found in PubMed

Choose for “Safe "cloudification" of large images through picker APIs.”addomitnot mine

Mechanistic Parameterization of the Kinomic Signal in Peptide Arrays.

Alex Dussaq, Joshua C Anderson, Christopher D Willey, Jonas S Almeida

Name match · unconfirmed Journal of proteomics & bioinformatics · 2016 · Found in PubMed

DOI: 10.4172/jpb.1000401

Choose for “Mechanistic Parameterization of the Kinomic Signal in Peptide Arrays.”addomitnot mine

Proteomic Analysis of Plasma from California Sea Lions (Zalophus californianus) Reveals Apolipoprotein E as a Candidate Biomarker of Chronic Domoic Acid Toxicosis.

Benjamin A Neely, Jason A Ferrante, J Mauro Chaves, Jennifer L Soper, Jonas S Almeida, John M Arthur, Frances M D Gulland, Michael G Janech

Name match · unconfirmed PloS one · 2014 · Found in PubMed

DOI: 10.1371/journal.pone.0123295

Choose for “Proteomic Analysis of Plasma from California Sea Lions (Zalophus californianus) Reveals Apolipoprotein E as a Candidate Biomarker of Chronic Domoic Acid Toxicosis.”addomitnot mine

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