STONY BROOK MEDICINE

Department of Biomedical Informatics

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Chao Chen

Department of Biomedical Informatics

Publications

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Supplementary Table 2 from Topology-Based Biomarkers Accurately Predict Breast Cancer Outcome and Survival

Sandeep K. Singhal, Chen Li, Andrew Aukerman, Mathieu Carrière, M. L. Miller, Hanina Hibshoosh, Jasmine A. McDonald, Joy Winfield, Sai Tun Hein Aung, Gustavo Martínez-Delgado, Ziv Frankenstein, Young Ho Lee, Raúl Rabadán, Joel Saltz, Chao Chen, Kevin Gardner

ORCID match · 2026 · Found in OpenAlex

DOI: 10.1158/0008-5472.32714673

Choose for “Supplementary Table 2 from Topology-Based Biomarkers Accurately Predict Breast Cancer Outcome and Survival”

Supplementary Table 1 from Topology-Based Biomarkers Accurately Predict Breast Cancer Outcome and Survival

Sandeep K. Singhal, Chen Li, Andrew Aukerman, Mathieu Carrière, M. L. Miller, Hanina Hibshoosh, Jasmine A. McDonald, Joy Winfield, Sai Tun Hein Aung, Gustavo Martínez-Delgado, Ziv Frankenstein, Young Ho Lee, Raúl Rabadán, Joel Saltz, Chao Chen, Kevin Gardner

ORCID match · 2026 · Found in OpenAlex

DOI: 10.1158/0008-5472.32714676

Choose for “Supplementary Table 1 from Topology-Based Biomarkers Accurately Predict Breast Cancer Outcome and Survival”

Supplementary Figure 9 from Topology-Based Biomarkers Accurately Predict Breast Cancer Outcome and Survival

Sandeep K. Singhal, Chen Li, Andrew Aukerman, Mathieu Carrière, M. L. Miller, Hanina Hibshoosh, Jasmine A. McDonald, Joy Winfield, Sai Tun Hein Aung, Gustavo Martínez-Delgado, Ziv Frankenstein, Young Ho Lee, Raúl Rabadán, Joel Saltz, Chao Chen, Kevin Gardner

ORCID match · 2026 · Found in OpenAlex

DOI: 10.1158/0008-5472.32714679

Choose for “Supplementary Figure 9 from Topology-Based Biomarkers Accurately Predict Breast Cancer Outcome and Survival”

Supplementary Figure 8 from Topology-Based Biomarkers Accurately Predict Breast Cancer Outcome and Survival

Sandeep K. Singhal, Chen Li, Andrew Aukerman, Mathieu Carrière, M. L. Miller, Hanina Hibshoosh, Jasmine A. McDonald, Joy Winfield, Sai Tun Hein Aung, Gustavo Martínez-Delgado, Ziv Frankenstein, Young Ho Lee, Raúl Rabadán, Joel Saltz, Chao Chen, Kevin Gardner

ORCID match · 2026 · Found in OpenAlex

DOI: 10.1158/0008-5472.32714682

Choose for “Supplementary Figure 8 from Topology-Based Biomarkers Accurately Predict Breast Cancer Outcome and Survival”

Supplementary Figure 7 from Topology-Based Biomarkers Accurately Predict Breast Cancer Outcome and Survival

Sandeep K. Singhal, Chen Li, Andrew Aukerman, Mathieu Carrière, M. L. Miller, Hanina Hibshoosh, Jasmine A. McDonald, Joy Winfield, Sai Tun Hein Aung, Gustavo Martínez-Delgado, Ziv Frankenstein, Young Ho Lee, Raúl Rabadán, Joel Saltz, Chao Chen, Kevin Gardner

ORCID match · 2026 · Found in OpenAlex

DOI: 10.1158/0008-5472.32714685

Choose for “Supplementary Figure 7 from Topology-Based Biomarkers Accurately Predict Breast Cancer Outcome and Survival”

Supplementary Figure 6 from Topology-Based Biomarkers Accurately Predict Breast Cancer Outcome and Survival

Sandeep K. Singhal, Chen Li, Andrew Aukerman, Mathieu Carrière, M. L. Miller, Hanina Hibshoosh, Jasmine A. McDonald, Joy Winfield, Sai Tun Hein Aung, Gustavo Martínez-Delgado, Ziv Frankenstein, Young Ho Lee, Raúl Rabadán, Joel Saltz, Chao Chen, Kevin Gardner

ORCID match · 2026 · Found in OpenAlex

DOI: 10.1158/0008-5472.32714688

Choose for “Supplementary Figure 6 from Topology-Based Biomarkers Accurately Predict Breast Cancer Outcome and Survival”

Supplementary Figure 5 from Topology-Based Biomarkers Accurately Predict Breast Cancer Outcome and Survival

Sandeep K. Singhal, Chen Li, Andrew Aukerman, Mathieu Carrière, M. L. Miller, Hanina Hibshoosh, Jasmine A. McDonald, Joy Winfield, Sai Tun Hein Aung, Gustavo Martínez-Delgado, Ziv Frankenstein, Young Ho Lee, Raúl Rabadán, Joel Saltz, Chao Chen, Kevin Gardner

ORCID match · 2026 · Found in OpenAlex

DOI: 10.1158/0008-5472.32714691

Choose for “Supplementary Figure 5 from Topology-Based Biomarkers Accurately Predict Breast Cancer Outcome and Survival”

Supplementary Figure 4 from Topology-Based Biomarkers Accurately Predict Breast Cancer Outcome and Survival

Sandeep K. Singhal, Chen Li, Andrew Aukerman, Mathieu Carrière, M. L. Miller, Hanina Hibshoosh, Jasmine A. McDonald, Joy Winfield, Sai Tun Hein Aung, Gustavo Martínez-Delgado, Ziv Frankenstein, Young Ho Lee, Raúl Rabadán, Joel Saltz, Chao Chen, Kevin Gardner

ORCID match · 2026 · Found in OpenAlex

DOI: 10.1158/0008-5472.32714694

Choose for “Supplementary Figure 4 from Topology-Based Biomarkers Accurately Predict Breast Cancer Outcome and Survival”

Supplementary Figure 3 from Topology-Based Biomarkers Accurately Predict Breast Cancer Outcome and Survival

Sandeep K. Singhal, Chen Li, Andrew Aukerman, Mathieu Carrière, M. L. Miller, Hanina Hibshoosh, Jasmine A. McDonald, Joy Winfield, Sai Tun Hein Aung, Gustavo Martínez-Delgado, Ziv Frankenstein, Young Ho Lee, Raúl Rabadán, Joel Saltz, Chao Chen, Kevin Gardner

ORCID match · 2026 · Found in OpenAlex

DOI: 10.1158/0008-5472.32714697

Choose for “Supplementary Figure 3 from Topology-Based Biomarkers Accurately Predict Breast Cancer Outcome and Survival”

Supplementary Figure 2 from Topology-Based Biomarkers Accurately Predict Breast Cancer Outcome and Survival

Sandeep K. Singhal, Chen Li, Andrew Aukerman, Mathieu Carrière, M. L. Miller, Hanina Hibshoosh, Jasmine A. McDonald, Joy Winfield, Sai Tun Hein Aung, Gustavo Martínez-Delgado, Ziv Frankenstein, Young Ho Lee, Raúl Rabadán, Joel Saltz, Chao Chen, Kevin Gardner

ORCID match · 2026 · Found in OpenAlex

DOI: 10.1158/0008-5472.32714700

Choose for “Supplementary Figure 2 from Topology-Based Biomarkers Accurately Predict Breast Cancer Outcome and Survival”

Supplementary Figure 10 from Topology-Based Biomarkers Accurately Predict Breast Cancer Outcome and Survival

Sandeep K. Singhal, Chen Li, Andrew Aukerman, Mathieu Carrière, M. L. Miller, Hanina Hibshoosh, Jasmine A. McDonald, Joy Winfield, Sai Tun Hein Aung, Gustavo Martínez-Delgado, Ziv Frankenstein, Young Ho Lee, Raúl Rabadán, Joel Saltz, Chao Chen, Kevin Gardner

ORCID match · 2026 · Found in OpenAlex

DOI: 10.1158/0008-5472.32714703

Choose for “Supplementary Figure 10 from Topology-Based Biomarkers Accurately Predict Breast Cancer Outcome and Survival”

Supplementary Figure 1 from Topology-Based Biomarkers Accurately Predict Breast Cancer Outcome and Survival

Sandeep K. Singhal, Chen Li, Andrew Aukerman, Mathieu Carrière, M. L. Miller, Hanina Hibshoosh, Jasmine A. McDonald, Joy Winfield, Sai Tun Hein Aung, Gustavo Martínez-Delgado, Ziv Frankenstein, Young Ho Lee, Raúl Rabadán, Joel Saltz, Chao Chen, Kevin Gardner

ORCID match · 2026 · Found in OpenAlex

DOI: 10.1158/0008-5472.32714706

Choose for “Supplementary Figure 1 from Topology-Based Biomarkers Accurately Predict Breast Cancer Outcome and Survival”

RankByGene: GeneGene-Guided Histopathology Representation Learning Through Cross-Modal Ranking Consistency

Wentao Huang, Meilong Xu, Xiaoling Hu, Shahira Abousamra, Aniruddha Ganguly, Saarthak Kapse, Alisa Yurovsky, Prateek Prasanna, Tahsin Kurç, Joel Saltz, Michael L. Miller, Chao Chen

ORCID match IEEE Transactions on Medical Imaging · 2026 · Found in OpenAlex

DOI: 10.1109/tmi.2026.3725898

Choose for “RankByGene: GeneGene-Guided Histopathology Representation Learning Through Cross-Modal Ranking Consistency”

Multi-center evaluation of radiomics and deep learning to stratify malignancy risk of IPMNs

Andrea Bejar, Maria Jaramillo Gonzalez, Ziliang Hong, Görkem Durak, Elif Keles, Halil Ertugrul Aktas, Zheyuan Zhang, Hongyi Pan, Zeynep Sue Jozwiak, Fergan Bol, Lili Zhao, Chao Chen, Concetto Spampinato, A Medetalibeyoglu, Sukru Mehmet Erturk, Gulbiz Dagoglu Kartal, Yury Velichko, Emil Agarunov, Ziyue Xu, Sachin Jambawalikar, I. G. Schoots, MJ Bruno, Chenchan Huang, Tamas Gonda, Candice W. Bolan, Frank H Miller, Michael B Wallace, Rajesh N Keswani, Pallavi Tiwari, Bagci Ulas

ORCID match Abdominal Radiology · 2026 · Found in OpenAlex

DOI: 10.1007/s00261-025-05371-3

Choose for “Multi-center evaluation of radiomics and deep learning to stratify malignancy risk of IPMNs”

Label-Efficient Deep Color Deconvolution of Brightfield Multiplex IHC Images

Shahira Abousamra, Danielle Fassler, Rajarsi Gupta, Tahsin Kurç, Luisa F. Escobar‐Hoyos, Dimitris Samaras, Kenneth R. Shroyer, Joel Saltz, Chao Chen

ORCID match IEEE Transactions on Medical Imaging · 2026 · Found in ORCID

DOI: 10.1109/tmi.2025.3609245

Choose for “Label-Efficient Deep Color Deconvolution of Brightfield Multiplex IHC Images”

Erratum to Wu J, Bae J, Chen C, Ryu S, Lozeau D, Stessin A, Prasanna P. Magnetic resonance imaging radiomic analysis of radiation-induced morphea of the breast: a proof-of-concept study. Adv Radiat Oncol 2025;10:101881

Jieying Wu, Joseph Bae, Chao Chen, Samuel Ryu, Daniel Lozeau, Alexander Stessin, Prateek Prasanna

ORCID match Advances in Radiation Oncology · 2026 · Found in OpenAlex

DOI: 10.1016/j.adro.2026.102011

Choose for “Erratum to Wu J, Bae J, Chen C, Ryu S, Lozeau D, Stessin A, Prasanna P. Magnetic resonance imaging radiomic analysis of radiation-induced morphea of the breast: a proof-of-concept study. Adv Radiat Oncol 2025;10:101881”

Data from Topology-Based Biomarkers Accurately Predict Breast Cancer Outcome and Survival

Sandeep K. Singhal, Chen Li, Andrew Aukerman, Mathieu Carrière, M. L. Miller, Hanina Hibshoosh, Jasmine A. McDonald, Joy Winfield, Sai Tun Hein Aung, Gustavo Martínez-Delgado, Ziv Frankenstein, Young Ho Lee, Raúl Rabadán, Joel Saltz, Chao Chen, Kevin Gardner

ORCID match · 2026 · Found in OpenAlex

DOI: 10.1158/0008-5472.c.8542716

Choose for “Data from Topology-Based Biomarkers Accurately Predict Breast Cancer Outcome and Survival”

Correction to: Multi-center evaluation of radiomics and deep learning to stratify malignancy risk of IPMNs

Andrea Bejar, Maria Jaramillo Gonzalez, Ziliang Hong, Görkem Durak, Elif Keles, Halil Ertugrul Aktas, Zheyuan Zhang, Hongyi Pan, Zeynep Sue Jozwiak, Fergan Bol, Lili Zhao, Chao Chen, Concetto Spampinato, Alpay Medetalibeyoglu, Sukru Mehmet Erturk, Gulbiz Dagoglu Kartal, Yury Velichko, Emil Agarunov, Ziyue Xu, Sachin Jambawalikar, Ivo G. Schoots, Marco J. Bruno, Chenchan Huang, Tamas Gonda, Candice W. Bolan, Frank H. Miller, Michael B. Wallace, Rajesh N. Keswani, Pallavi Tiwari, Ulas Bagci

ORCID match Abdominal Radiology · 2026 · Found in OpenAlex

DOI: 10.1007/s00261-026-05466-5

Choose for “Correction to: Multi-center evaluation of radiomics and deep learning to stratify malignancy risk of IPMNs”

Recovering manifold representations via unsupervised meta-learning

Yunye Gong, Jiachen Yao, Ruyi Lian, Lin Xiao, Chao Chen, Ajay Divakaran, Yi Yao

ORCID match Frontiers in Computer Science · 2025 · Found in OpenAlex

DOI: 10.3389/fcomp.2024.1255517

Choose for “Recovering manifold representations via unsupervised meta-learning”

Radiofrequency ablation with or without capecitabine maintenance therapy for lung oligometastases from colorectal cancer

Ke-Ning Li, Leilei Ying, Nan Du, Ying Wang, Haozhe Huang, Yao-Hui Wang, Lichao Xu, Qing Zhao, Ge Song, Yubin Hu, Wentao Li, Yan Yan, Chao Chen, Xin-Hong He

ORCID match World Journal of Gastroenterology · 2025 · Found in OpenAlex

DOI: 10.3748/wjg.v31.i35.110152

Choose for “Radiofrequency ablation with or without capecitabine maintenance therapy for lung oligometastases from colorectal cancer”

Multi-center evaluation of radiomics and deep learning to stratify malignancy risk of IPMNs

Andrea Mia Bejar, Maria Gonzalez, Ziliang Hong, Görkem Durak, Elif Keleş, Halil Ertugrul Aktas, Zheyuan Zhang, Hongyi Pan, Zeynep Sue Jozwiak, Fergan Bol, Lili Zhao, Chao Chen, Concetto Spampinato, Alpay Medetalibeyoğlu, Şükrü Mehmet Ertürk, Gulbiz Dagoglu Kartal, Yury Velichko, Emil Agarunov, Ziyue Xu, Sachin Jambawalikar, Ivo G. Schoots, Marco J. Bruno, Chenchang Huang, Tamas A. Gonda, Candice W. Bolan, Frank H. Miller, Michael B. Wallace, Rajesh N. Keswani, Pallavi Tiwari, Ulaş Bağcı

ORCID match Research Square · 2025 · Found in OpenAlex

DOI: 10.21203/rs.3.rs-6622868/v1

Choose for “Multi-center evaluation of radiomics and deep learning to stratify malignancy risk of IPMNs”

Exploring and Analyzing the Application Value of Endoscopic Nasal Septum Deviation Correction Combined with Low-Temperature Plasma Radiofrequency Ablation in the Treatment of Chronic Sinusitis

Chao Chen, Rui Wu

ORCID match Advances in Precision Medicine · 2025 · Found in OpenAlex

DOI: 10.18063/apm.v10i3.622

Choose for “Exploring and Analyzing the Application Value of Endoscopic Nasal Septum Deviation Correction Combined with Low-Temperature Plasma Radiofrequency Ablation in the Treatment of Chronic Sinusitis”

[Exploration and validation of optimal cut-off values for tPSA and fPSA/tPSA screening of prostate cancer at different ages].

Margaret Liu, Haiyan Duan, D Q Zhang, Chao Chen, Y T Ji, Yibo Zhang, Zhong-Wen Feng, Yuanhang Liu, Jerry Li, Yujie Zhang, C Y Li, Y C Zhang, Lei Yang, Zhangyan Lyu, Feifeng Song, Feng Song, Yubei Huang

ORCID match PubMed · 2024 · Found in OpenAlex

DOI: 10.3760/cma.j.cn112152-20230805-00062

Choose for “[Exploration and validation of optimal cut-off values for tPSA and fPSA/tPSA screening of prostate cancer at different ages].”

Using phage display for rational engineering of a higher affinity humanized 3’phosphohistidine-specific antibody

Gregory D. Martyn, Rajasree Kalagiri, Gianluca Veggiani, Robyn L. Stanfield, Indrani Choudhuri, Margaux Sala, Jill Meisenhelder, Chao Chen, Avik Biswas, Ronald M. Levy, Dmitry Lyumkis, Ian A. Wilson, Tony Hunter, Sachdev S. Sidhu

ORCID match bioRxiv (Cold Spring Harbor Laboratory) · 2024 · Found in OpenAlex

DOI: 10.1101/2024.11.04.621849

Choose for “Using phage display for rational engineering of a higher affinity humanized 3’phosphohistidine-specific antibody”

Topological Analysis Of Mouse Brain Vasculature Via 3D Light-Sheet Microscopy Images

ORCID match IEEE International Symposium on Biomedical Imaging (ISBI) · 2024 · Found in ORCID

Choose for “Topological Analysis Of Mouse Brain Vasculature Via 3D Light-Sheet Microscopy Images”

New Spatial Phenotypes from Imaging Uncover Survival Differences for Breast Cancer Patients

Mahmudul Hasan, Ariadna Kim Silva, Shahira Abousamra, Shao‐Jun Tang, Prateek Prasanna, Joel Saltz, Kevin Gardner, Chao Chen, Alisa Yurovsky

ORCID match ACM-BCB ... ... : the ... ACM Conference on Bioinformatics, Computational Biology and Biomedicine. ACM Conference on Bioinformatics, Computational Biology and Biomedicine · 2024 · Found in ORCID, OpenAlex

DOI: 10.1145/3698587.3701333

Choose for “New Spatial Phenotypes from Imaging Uncover Survival Differences for Breast Cancer Patients”

Manifold-driven decomposition for adversarial robustness

Wenjia Zhang, Yikai Zhang, Xiaoling Hu, Yi Yao, Mayank Goswami, Chao Chen, Dimitris Metaxas

ORCID match Frontiers in Computer Science · 2024 · Found in OpenAlex

DOI: 10.3389/fcomp.2023.1274695

Choose for “Manifold-driven decomposition for adversarial robustness”

Keratin 17 modulates the immune topography of pancreatic cancer

Lyanne A. Delgado-Coka, Michael Horowitz, Mariana Torrente-Goncalves, Lucia Roa‐Peña, Cindy V. Leiton, Mahmudul Hasan, Sruthi Babu, Danielle Fassler, Jaymie Oentoro, Ji-Dong Karen Bai, Emanuel F. Petricoin, Lynn M. Matrisian, Edik M. Blais, Natalia Marchenko, Felicia D. Allard, Wei Jiang, Brent K. Larson, Andrew Hendifar, Chao Chen, Shahira Abousamra, Dimitris Samaras, Tahsin Kurç, Joel Saltz, Luisa F. Escobar‐Hoyos, Kenneth R. Shroyer

ORCID match Research Square · 2024 · Found in OpenAlex

DOI: 10.21203/rs.3.rs-3886691/v1

Choose for “Keratin 17 modulates the immune topography of pancreatic cancer”

Habitat-based radiomics analysis for evaluating immediate response in colorectal cancer lung metastases treated by radiofrequency ablation

Haozhe Huang, Hong Chen, Dezhong Zheng, Chao Chen, Ying Wang, Lichao Xu, Yaohui Wang, Xinhong He, Yuanyuan Yang, Wentao Li

ORCID match Cancer Imaging · 2024 · Found in OpenAlex

DOI: 10.1186/s40644-024-00692-w

Choose for “Habitat-based radiomics analysis for evaluating immediate response in colorectal cancer lung metastases treated by radiofrequency ablation”

Feature fusion analysis approach based on synchronous EEG-fNIRS signals: application in etomidate use disorder individuals

Tianxin Gao, Chao Chen, Guangyao Liang, Yuchen Ran, Qiuping Huang, Zhenjiang Liao, Bolin He, Tefu Liu, Xiaoying Tang, Hongxian Chen, Yingwei Fan

ORCID match Biomedical Optics Express · 2024 · Found in OpenAlex

DOI: 10.1364/boe.542078

Choose for “Feature fusion analysis approach based on synchronous EEG-fNIRS signals: application in etomidate use disorder individuals”

Anomaly-guided weakly supervised lesion segmentation on retinal OCT images

Jiaqi Yang, Nitish Mehta, Gozde Merve Demirci, Xiaoling Hu, Meera S. Ramakrishnan, Mina M. Naguib, Chao Chen, Chia-Ling Tsai

ORCID match Medical Image Analysis · 2024 · Found in OpenAlex

DOI: 10.1016/j.media.2024.103139

Choose for “Anomaly-guided weakly supervised lesion segmentation on retinal OCT images”

Topology-Guided Multi-Class Cell Context Generation for Digital Pathology

ORCID match Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition · 2023 · Found in ORCID

Choose for “Topology-Guided Multi-Class Cell Context Generation for Digital Pathology”

Topology-Guided Multi-Class Cell Context Generation for Digital Pathology

Shahira Abousamra, Rajarsi Gupta, Tahsin Kurç, Dimitris Samaras, Joel Saltz, Chao Chen

ORCID match Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition · 2023 · Found in OpenAlex

DOI: 10.1109/cvpr52729.2023.00324

Choose for “Topology-Guided Multi-Class Cell Context Generation for Digital Pathology”

Topology-Aware Uncertainty for Image Segmentation

ORCID match Advances in Neural Information Processing Systems · 2023 · Found in ORCID

Choose for “Topology-Aware Uncertainty for Image Segmentation”

Topology-Aware Uncertainty for Image Segmentation

Saumya Gupta, Yikai Zhang, Hu, Xiaoling, Prateek Prasanna, Chao Chen

ORCID match PubMed · 2023 · Found in OpenAlex

DOI: 10.48550/arxiv.2306.05671

Choose for “Topology-Aware Uncertainty for Image Segmentation”

MRI-Based Radiomics and Delta-Radiomics Models of the Patella Predict the Radiographic Progression of Osteoarthritis: Data From the FNIH OA Biomarkers Consortium

Hai Jiang, Peng Yi, Siyu Qin, Chao Chen, Yu Pu, Rui Liang, Yong Chen, Xiao Ming Zhang, Yang-bai Sun, Hou-Dong Zuo

ORCID match Academic Radiology · 2023 · Found in OpenAlex

DOI: 10.1016/j.acra.2023.10.003

Choose for “MRI-Based Radiomics and Delta-Radiomics Models of the Patella Predict the Radiographic Progression of Osteoarthritis: Data From the FNIH OA Biomarkers Consortium”

Impact of ROIs Delineation Strategies on the Performance of Artificial Intelligence-Aided COVID-19 Screening Algorithms

Wenchao Zhu, Dingpin Huang, Kaihua Lou, Fangyi Xu, Chao Chen, Dawei Wang, Weixiong Tan, Weidao Chen, Qingqing Chen, Yong Zhou, Yongjiu Liu, Bing Wang, Xiaoguo Zhang, Zhongfa Zhang, Jianjun Zhang, Mingxia Sun, Guohua Zhang, Guojiao Dai, Hongjie Hu

ORCID match Research Square · 2023 · Found in OpenAlex

DOI: 10.21203/rs.3.rs-3241112/v1

Choose for “Impact of ROIs Delineation Strategies on the Performance of Artificial Intelligence-Aided COVID-19 Screening Algorithms”

Effect of Macular Internal Limiting Membrane Peeling on Single Surgery Success Rates of Vitrectomy for Uncomplicated, Primary Macula-Off Retinal Detachment

R. Martens, Chao Chen, David Ehmann, Mark Greve, Mark E. Seamone

ORCID match Journal of VitreoRetinal Diseases · 2023 · Found in OpenAlex

DOI: 10.1177/24741264231155352

Choose for “Effect of Macular Internal Limiting Membrane Peeling on Single Surgery Success Rates of Vitrectomy for Uncomplicated, Primary Macula-Off Retinal Detachment”

Backdoor Cleansing with Unlabeled Data

Lu Pang, Tao Sun, Haibin Ling, Chao Chen

ORCID match · 2023 · Found in OpenAlex

DOI: 10.1109/cvpr52729.2023.01176

Choose for “Backdoor Cleansing with Unlabeled Data”

ASO Visual Abstract: A Multi-Institutional Study Analyzing the Combined Effect of Micropapillary Component and Consolidation-to-Tumor Ratio Exceeding 0.5 on the Prognosis for Pathologic Stage IA3 Lung Adenocarcinoma

Shao‐jun Xu, Jia-hua Tu, Hui Chen, Renhe Yan, Rui-qin Chen, Chao Chen, Cheng‐xiong You, Zhi-fan Zhang, Shaobin Yu, Shuchen Chen

ORCID match Annals of Surgical Oncology · 2023 · Found in OpenAlex

DOI: 10.1245/s10434-023-13708-9

Choose for “ASO Visual Abstract: A Multi-Institutional Study Analyzing the Combined Effect of Micropapillary Component and Consolidation-to-Tumor Ratio Exceeding 0.5 on the Prognosis for Pathologic Stage IA3 Lung Adenocarcinoma”

Ultrapotent and broad neutralization of SARS-CoV-2 variants by modular, tetravalent, bi-paratopic antibodies

Shane Miersch, Nitin Sharma, Reza Saberianfar, Chao Chen, Francesca Caccuri, Alberto Zani, Arnaldo Caruso, James Brett Case, Michael Diamond, Gaya K. Amarasinghe, Giuseppe Novelli, Sachdev S. Sidhu

ORCID match Cell Reports · 2022 · Found in OpenAlex

DOI: 10.1016/j.celrep.2022.110905

Choose for “Ultrapotent and broad neutralization of SARS-CoV-2 variants by modular, tetravalent, bi-paratopic antibodies”

Persistent homology based characterization of the breast cancer immune microenvironment: a feasibility study

ORCID match Journal of Computational Geometry · 2022 · Found in ORCID

Choose for “Persistent homology based characterization of the breast cancer immune microenvironment: a feasibility study”

Neural approximation of graph topological features

ORCID match Advances in Neural Information Processing Systems · 2022 · Found in ORCID

Choose for “Neural approximation of graph topological features”

Management of Inedible Airway Foreign Bodies in Pediatric Rigid Bronchoscopy: Experience From a National Children's Regional Medical Center in China

Bin Xu, Lei Wu, Jing Bi, Jia Liu, Cao Chen, Lexi Lin, Chao Chen, Fei Qiu, Shiqiang Shang

ORCID match Frontiers in Pediatrics · 2022 · Found in OpenAlex

DOI: 10.3389/fped.2022.891864

Choose for “Management of Inedible Airway Foreign Bodies in Pediatric Rigid Bronchoscopy: Experience From a National Children's Regional Medical Center in China”

Learning topological interactions for multi-class medical image segmentation

ORCID match European Conference on Computer Vision · 2022 · Found in ORCID

Choose for “Learning topological interactions for multi-class medical image segmentation”

Learning Topological Interactions for Multi-Class Medical Image Segmentation

Saumya Gupta, Xiaoling Hu, James Kaan, Michael Jin, Mutshipay Mpoy, Katherine Chung, Gagandeep Singh, Mary Saltz, Tahsin Kurç, Joel Saltz, Apostolos K. Tassiopoulos, Prateek Prasanna, Chao Chen

ORCID match Lecture notes in computer science · 2022 · Found in OpenAlex

DOI: 10.1007/978-3-031-19818-2_40

Choose for “Learning Topological Interactions for Multi-Class Medical Image Segmentation”

Learning Probabilistic Topological Representations Using Discrete Morse Theory

ORCID match The Eleventh International Conference on Learning Representations · 2022 · Found in ORCID

Choose for “Learning Probabilistic Topological Representations Using Discrete Morse Theory”

Generative adversarial networks with adaptive normalization for synthesizing T2-weighted magnetic resonance images from diffusion-weighted images

Yanyan Mao, Chao Chen, Zhenjie Wang, Dapeng Cheng, Panlu You, Xingdan Huang, Baosheng Zhang, Feng Zhao

ORCID match Frontiers in Neuroscience · 2022 · Found in OpenAlex

DOI: 10.3389/fnins.2022.1058487

Choose for “Generative adversarial networks with adaptive normalization for synthesizing T2-weighted magnetic resonance images from diffusion-weighted images”

GPU Computation of the Euler Characteristic Curve for Imaging Data

ORCID match 38th International Symposium on Computational Geometry (SoCG 2022) · 2022 · Found in ORCID

Choose for “GPU Computation of the Euler Characteristic Curve for Imaging Data”

Endoscopic Release Superficial Rather Than Deep to the Transverse Carpal Ligament for Carpal Tunnel Syndrome Improves Immediate Postoperative Transient Symptomatic Exacerbation With Fewer Absences From Work

Ruihong Wei, Chao Chen, Yingnan Liu, Zhaokang Liu, Hongtao Xiong, Xu Zhang, Yongqing Zhuang

ORCID match Arthroscopy The Journal of Arthroscopic and Related Surgery · 2022 · Found in OpenAlex

DOI: 10.1016/j.arthro.2022.09.013

Choose for “Endoscopic Release Superficial Rather Than Deep to the Transverse Carpal Ligament for Carpal Tunnel Syndrome Improves Immediate Postoperative Transient Symptomatic Exacerbation With Fewer Absences From Work”

Comparison of characteristics between neuropathic pain and non-neuropathic pain in patients with diabetic carpal tunnel syndrome: A cross-sectional study

Yingnan Liu, Yongqing Zhuang, Ruihong Wei, Zhouyong Tan, Chao Chen, Dazhi Yang

ORCID match Frontiers in Surgery · 2022 · Found in OpenAlex

DOI: 10.3389/fsurg.2022.961616

Choose for “Comparison of characteristics between neuropathic pain and non-neuropathic pain in patients with diabetic carpal tunnel syndrome: A cross-sectional study”

An Integrated LSTM-HeteroRGNN Model for Interpretable Opioid Overdose Risk Prediction

Xinyu Dong, Rachel Wong, Weimin Lyu, Kayley Abell-Hart, Jianyuan Deng, Yinan Liu, Janos Hajagos, Richard N. Rosenthal, Chao Chen, Fusheng Wang

ORCID match SSRN Electronic Journal · 2022 · Found in OpenAlex

DOI: 10.2139/ssrn.4007155

Choose for “An Integrated LSTM-HeteroRGNN Model for Interpretable Opioid Overdose Risk Prediction”

A Study of the Attention Abnormality in Trojaned BERTs

Weimin Lyu, Songzhu Zheng, Tengfei Ma, Chao Chen

ORCID match Proceedings of the 2022 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies · 2022 · Found in OpenAlex

DOI: 10.18653/v1/2022.naacl-main.348

Choose for “A Study of the Attention Abnormality in Trojaned BERTs”

A Novel Framework for Characterization of Tumor-Immune Spatial Relationships in Tumor Microenvironment

Mahmudul Hasan, Jakub Kaczmarzyk, David Paredes, Lyanne Oblein, Jaymie Oentoro, Shahira Abousamra, Michael Horowitz, Dimitris Samaras, Chao Chen, Tahsin Kurç, Kenneth R. Shroyer, Joel Saltz

ORCID match arXiv (Cornell University) · 2022 · Found in OpenAlex

DOI: 10.48550/arxiv.2204.12283

Choose for “A Novel Framework for Characterization of Tumor-Immune Spatial Relationships in Tumor Microenvironment”

Ultrapotent and Broad Neutralization of SARS-CoV-2 Variants by Modular, Tetravalent, Bi-paratopic Antibodies

Shane Miersch, Reza Saberianfar, Chao Chen, Nitin Sharma, Gaya K. Amarasinghe, Francesca Caccuri, Alberto Zani, Arnaldo Caruso, Giuseppe Novelli, Sachdev S. Sidhu

ORCID match bioRxiv (Cold Spring Harbor Laboratory) · 2021 · Found in OpenAlex

DOI: 10.1101/2021.11.02.466984

Choose for “Ultrapotent and Broad Neutralization of SARS-CoV-2 Variants by Modular, Tetravalent, Bi-paratopic Antibodies”

Topology-Aware Segmentation Using Discrete Morse Theory

Hu, Xiaoling, Yusu Wang, Fuxin Li, Dimitris Samaras, Chao Chen

ORCID match PubMed · 2021 · Found in OpenAlex

DOI: 10.48550/arxiv.2103.09992

Choose for “Topology-Aware Segmentation Using Discrete Morse Theory”

Topological detection of trojaned neural networks

ORCID match Advances in Neural Information Processing Systems · 2021 · Found in ORCID

Choose for “Topological detection of trojaned neural networks”

Topological Detection of Trojaned Neural Networks

Songzhu Zheng, Yikai Zhang, Hubert Wagner, Mayank Goswami, Chao Chen

ORCID match arXiv (Cornell University) · 2021 · Found in OpenAlex

DOI: 10.48550/arxiv.2106.06469

Choose for “Topological Detection of Trojaned Neural Networks”

TopoTxR: a topological biomarker for predicting treatment response in breast cancer

ORCID match International Conference on Information Processing in Medical Imaging · 2021 · Found in ORCID

Choose for “TopoTxR: a topological biomarker for predicting treatment response in breast cancer”

Predicting COVID-19 Lung Infiltrate Progression on Chest Radiographs Using Spatio-temporal LSTM based Encoder-Decoder Network

Aishik Konwer, Joseph Bae, Gagandeep Singh, Rishabh Gattu, Syed Liaquat Ali, Jeremy Green, Tej Phatak, Amit Gupta, Chao Chen, Joel Saltz, Prateek Prasanna

ORCID match Medical Imaging with Deep Learning · 2021 · Found in OpenAlex

Choose for “Predicting COVID-19 Lung Infiltrate Progression on Chest Radiographs Using Spatio-temporal LSTM based Encoder-Decoder Network”

Multi-Class Cell Detection Using Spatial Context Representation

Shahira Abousamra, David Belinsky, John Van Arnam, Felicia D. Allard, Eric U. Yee, Rajarsi Gupta, Tahsin Kurç, Dimitris Samaras, Joel Saltz, Chao Chen

ORCID match 2021 IEEE/CVF International Conference on Computer Vision (ICCV) · 2021 · Found in OpenAlex

DOI: 10.1109/iccv48922.2021.00397

Choose for “Multi-Class Cell Detection Using Spatial Context Representation”

Multi-Class Cell Detection Using Spatial Context Representation

Shahira Abousamra, David Belinsky, John Van Arnam, Felicia D. Allard, Eric U. Yee, Rajarsi Gupta, Tahsin Kurç, Dimitris Samaras, Joel Saltz, Chao Chen

ORCID match arXiv (Cornell University) · 2021 · Found in OpenAlex

DOI: 10.48550/arxiv.2110.04886

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Localization in the crowd with topological constraints

ORCID match Proceedings of the AAAI Conference on Artificial Intelligence · 2021 · Found in ORCID

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Localization in the crowd with topological constraints

ORCID match Proceedings of the AAAI Conference on Artificial Intelligence · 2021 · Found in ORCID

Choose for “Localization in the crowd with topological constraints”

Localization in the Crowd with Topological Constraints

Shahira Abousamra, Minh Hoai, Dimitris Samaras, Chao Chen

ORCID match Proceedings of the AAAI Conference on Artificial Intelligence · 2021 · Found in OpenAlex

DOI: 10.1609/aaai.v35i2.16170

Choose for “Localization in the Crowd with Topological Constraints”

Link prediction with persistent homology: An interactive view

ORCID match International conference on machine learning · 2021 · Found in ORCID

Choose for “Link prediction with persistent homology: An interactive view”

Link Prediction with Persistent Homology: An Interactive View

Zuoyu Yan, Tengfei Ma, Liangcai Gao, Zhi Tang, Chao Chen

ORCID match arXiv (Cornell University) · 2021 · Found in OpenAlex

DOI: 10.48550/arxiv.2102.10255

Choose for “Link Prediction with Persistent Homology: An Interactive View”

A topological-attention ConvLSTM network and its application to EM images

ORCID match Medical Image Computing and Computer Assisted Intervention--MICCAI 2021: 24th International Conference, Strasbourg, France, September 27--October 1, 2021, Proceedings, Part I 24 · 2021 · Found in ORCID

Choose for “A topological-attention ConvLSTM network and its application to EM images”

3D topology-preserving segmentation with compound multi-slice representation

ORCID match 2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI) · 2021 · Found in ORCID

Choose for “3D topology-preserving segmentation with compound multi-slice representation”

Weakly-Supervised Deep Stain Decomposition for Multiplex IHC Images

Shahira Abousamra, Danielle Fassler, Le Hou, Yuwei Zhang, Rajarsi Gupta, Tahsin Kurç, Luisa F. Escobar‐Hoyos, Dimitris Samaras, Beatrice Knudson, Kenneth R. Shroyer, Joel Saltz, Chao Chen

ORCID match · 2020 · Found in OpenAlex

DOI: 10.1109/isbi45749.2020.9098652

Choose for “Weakly-Supervised Deep Stain Decomposition for Multiplex IHC Images”

Topology-Aware Segmentation Using Discrete Morse Theory

ORCID match International Conference on Learning Representations · 2020 · Found in ORCID

Choose for “Topology-Aware Segmentation Using Discrete Morse Theory”

Topology-Aware Segmentation Using Discrete Morse Theory

ORCID match International Conference on Learning Representations · 2020 · Found in ORCID

Choose for “Topology-Aware Segmentation Using Discrete Morse Theory”

Topogan: A topology-aware generative adversarial network

ORCID match Computer Vision--ECCV 2020: 16th European Conference, Glasgow, UK, August 23--28, 2020, Proceedings, Part III 16 · 2020 · Found in ORCID

Choose for “Topogan: A topology-aware generative adversarial network”

TopoGAN: A Topology-Aware Generative Adversarial Network

Fan Wang, Huidong Liu, Dimitris Samaras, Chao Chen

ORCID match Lecture notes in computer science · 2020 · Found in OpenAlex

DOI: 10.1007/978-3-030-58580-8_8

Choose for “TopoGAN: A Topology-Aware Generative Adversarial Network”

Persistence enhanced graph neural network

ORCID match International Conference on Artificial Intelligence and Statistics · 2020 · Found in ORCID

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Persistence enhanced graph neural network

ORCID match International Conference on Artificial Intelligence and Statistics · 2020 · Found in ORCID

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Local Regularizer Improves Generalization

Yikai Zhang, Hui Qu, Dimitris Metaxas, Chao Chen

ORCID match Proceedings of the AAAI Conference on Artificial Intelligence · 2020 · Found in OpenAlex

DOI: 10.1609/aaai.v34i04.6167

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Learn distributed GAN with Temporary Discriminators

Hui Qu, Yikai Zhang, Qi Chang, Zhennan Yan, Chao Chen, Dimitris Metaxas

ORCID match arXiv (Cornell University) · 2020 · Found in OpenAlex

DOI: 10.48550/arxiv.2007.09221

Choose for “Learn distributed GAN with Temporary Discriminators”

Learn Distributed GAN with Temporary Discriminators

Hui Qu, Yikai Zhang, Qi Chang, Zhennan Yan, Chao Chen, Dimitris Metaxas

ORCID match Lecture notes in computer science · 2020 · Found in OpenAlex

DOI: 10.1007/978-3-030-58583-9_11

Choose for “Learn Distributed GAN with Temporary Discriminators”

Error-Bounded Correction of Noisy Labels

Songzhu Zheng, Pengxiang Wu, Aman Goswami, Mayank Goswami, Dimitris Metaxas, Chao Chen

ORCID match arXiv (Cornell University) · 2020 · Found in OpenAlex

Choose for “Error-Bounded Correction of Noisy Labels”

Deep learning-based image analysis methods for brightfield-acquired multiplex immunohistochemistry images

Danielle Fassler, Shahira Abousamra, Rajarsi Gupta, Chao Chen, Maozheng Zhao, David Paredes, Syeda Areeha Batool, Beatrice S. Knudsen, Luisa F. Escobar‐Hoyos, Kenneth R. Shroyer, Dimitris Samaras, Tahsin Kurç, Joel Saltz

ORCID match Diagnostic Pathology · 2020 · Found in OpenAlex

DOI: 10.1186/s13000-020-01003-0

Choose for “Deep learning-based image analysis methods for brightfield-acquired multiplex immunohistochemistry images”

Deep Variational Instance Segmentation

Jialin Yuan, Chao Chen, Fuxin Li

ORCID match arXiv (Cornell University) · 2020 · Found in OpenAlex

DOI: 10.48550/arxiv.2007.11576

Choose for “Deep Variational Instance Segmentation”

Cryopreservation in Ophthalmology

Yuting Shao, Chao Chen, Qi Zhou, Jun Yang, Xiao Lv, Mingyue Lin, Yanlong Bi

ORCID match IntechOpen eBooks · 2020 · Found in OpenAlex

DOI: 10.5772/intechopen.91312

Choose for “Cryopreservation in Ophthalmology”

Automated Assessment of the Curliness of Collagen Fiber in Breast Cancer

David Paredes, Prateek Prasanna, Christina Preece, Rajarsi Gupta, Farzad Fereidouni, Dimitris Samaras, Tahsin Kurç, Richard M. Levenson, Patricia Thompson-Carino, Joel Saltz, Chao Chen

ORCID match Lecture notes in computer science · 2020 · Found in OpenAlex

DOI: 10.1007/978-3-030-66415-2_17

Choose for “Automated Assessment of the Curliness of Collagen Fiber in Breast Cancer”

Topology-Preserving Deep Image Segmentation

Xiao Hu, Fuxin Li, Dimitris Samaras, Chao Chen

ORCID match arXiv (Cornell University) · 2019 · Found in OpenAlex

Choose for “Topology-Preserving Deep Image Segmentation”

Point Cloud Processing via Recurrent Set Encoding

Pengxiang Wu, Chao Chen, Jingru Yi, Dimitris Metaxas

ORCID match arXiv (Cornell University) · 2019 · Found in OpenAlex

DOI: 10.48550/arxiv.1911.10729

Choose for “Point Cloud Processing via Recurrent Set Encoding”

Point Cloud Processing via Recurrent Set Encoding

Pengxiang Wu, Chao Chen, Jingru Yi, Dimitris Metaxas

ORCID match Proceedings of the AAAI Conference on Artificial Intelligence · 2019 · Found in OpenAlex

DOI: 10.1609/aaai.v33i01.33015441

Choose for “Point Cloud Processing via Recurrent Set Encoding”

Hardware Acceleration of Persistent Homology Computation

Fan Wang, Chunhua Deng, Bo Yuan, Chao Chen

ORCID match Lecture notes in computer science · 2019 · Found in OpenAlex

DOI: 10.1007/978-3-030-33642-4_9

Choose for “Hardware Acceleration of Persistent Homology Computation”

Diverse Multiple Prediction on Neuron Image Reconstruction

Ze Ye, Cong Chen, Changhe Yuan, Chao Chen

ORCID match Lecture notes in computer science · 2019 · Found in OpenAlex

DOI: 10.1007/978-3-030-32239-7_51

Choose for “Diverse Multiple Prediction on Neuron Image Reconstruction”

Hick–Hyman Law is Mediated by the Cognitive Control Network in the Brain

Tingting Wu, Alexander J. Dufford, Laura Egan, Melissa‐Ann Mackie, Cong Chen, Changhe Yuan, Chao Chen, Xiaobo Li, Xun Liu, Patrick R. Hof, Jin Fan

ORCID match Cerebral Cortex · 2017 · Found in OpenAlex

DOI: 10.1093/cercor/bhx127

Choose for “Hick–Hyman Law is Mediated by the Cognitive Control Network in the Brain”

Native Folding of a Recombinant gpE1/gpE2 Heterodimer Vaccine Antigen from a Precursor Protein Fused with Fc IgG

Michael Logan, John Law, Jason Wong, Darren Hockman, Amir Landi, Chao Chen, Kevin Crawford, Juthika Kundu, Lesley Baldwin, Janelle Johnson, Anita Dahiya, Gerald LaChance, Joseph Marcotrigiano, Mansun Law, Steven K. H. Foung, D. Lorne Tyrrell, Michael Houghton

ORCID match Journal of Virology · 2016 · Found in OpenAlex

DOI: 10.1128/jvi.01552-16

Choose for “Native Folding of a Recombinant gpE1/gpE2 Heterodimer Vaccine Antigen from a Precursor Protein Fused with Fc IgG”

Morphological analysis of the papillary muscles and the trabeculae

Mingchen Gao, Chao Chen, Shaoting Zhang, Zhen Qian, Mani A. Vannan, Sarah Rinehart, Dimitris Metaxas, Leon Axel

ORCID match · 2014 · Found in OpenAlex

DOI: 10.1109/isbi.2014.6867886

Choose for “Morphological analysis of the papillary muscles and the trabeculae”

Influence factors affecting insular gliomas prognosis

Juxiang Chen, Tao Xu, Rong Qin, Yong Yan, Chao Chen, Yicheng Lu

ORCID match Chinese Journal of Neuromedicine · 2013 · Found in OpenAlex

DOI: 10.3760/cma.j.issn.1671-8925.2013.11.012

Choose for “Influence factors affecting insular gliomas prognosis”

Common Single Nucleotide Polymorphisms and Keratoconus in the Han Chinese Population

Yani Wang, Tianbo Jin, Xue‐Hui Zhang, Wei Wei, Yan Cui, Tingting Geng, Qianping Liu, Jing Gao, Ming Liu, Chao Chen, Changning Zhang, Xiuping Zhu

ORCID match Ophthalmic Genetics · 2013 · Found in OpenAlex

DOI: 10.3109/13816810.2012.743569

Choose for “Common Single Nucleotide Polymorphisms and Keratoconus in the Han Chinese Population”

Microsurgery for recurrent carpal tunnel syndrome

Shi‐Ming Feng, Shunhong Gao, Chao Chen

ORCID match Zhonghua chuangshang guke zazhi · 2012 · Found in OpenAlex

DOI: 10.3760/cma.j.issn.1671-7600.2012.04.004

Choose for “Microsurgery for recurrent carpal tunnel syndrome”
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