STONY BROOK MEDICINE

Department of Biomedical Informatics

READ-ONLY PREVIEW · No login required. Choices are not saved; QLever and Drupal are not modified.

FACULTY PROFILE · REVIEW PREVIEW

Ramana V Davuluri

Department of Biomedical Informatics

Publications

Choose add to include a publication, omit to leave it off your page, or not mine if you did not author it. Omit does not change authorship. Leave an unreviewed row untouched to decide later.

TSProm: deep learning framework to predict tissue-specific regulatory logic

Pallavi Surana, Pratik Dutta, Nimisha Papineni, Rekha Sathian, Zhihan Zhou, Han Liu, Ramana V. Davuluri

ORCID match NAR Genomics and Bioinformatics · 2026 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1093/nargab/lqag050

Choose for “TSProm: deep learning framework to predict tissue-specific regulatory logic”

HViLM: A Foundation Model for Viral Genomics Enables Multi-Task Prediction of Pathogenicity, Transmissibility, and Host Tropism.

Pratik Dutta, Jack Vaska, Pallavi Surana, Rekha Sathian, Max Chao, Zhihan Zhou, Han Liu, Ramana V Davuluri

ORCID match bioRxiv : the preprint server for biology · 2026 · Found in ORCID, PubMed

DOI: 10.64898/2026.03.18.712700

Choose for “HViLM: A Foundation Model for Viral Genomics Enables Multi-Task Prediction of Pathogenicity, Transmissibility, and Host Tropism.”

Development of gemcitabine-modified miR-15a as a novel, multimodal treatment strategy to overcome 5-FU and oxaliplatin resistance in colorectal cancer

Anushka Ojha, Amartya Pal, Max Chao, Ramana V. Davuluri, Jingfang Ju

ORCID match bioRxiv (Cold Spring Harbor Laboratory) · 2026 · Found in ORCID, OpenAlex

DOI: 10.64898/2026.04.25.720825

Choose for “Development of gemcitabine-modified miR-15a as a novel, multimodal treatment strategy to overcome 5-FU and oxaliplatin resistance in colorectal cancer”

DNABERT-Enhancer Trained Models

Rekha Sathian, Pratik Dutta, Ferhat Ay, Ramana V. Davuluri

ORCID match Zenodo (CERN European Organization for Nuclear Research) · 2026 · Found in ORCID, OpenAlex

DOI: 10.5281/zenodo.19157565

Choose for “DNABERT-Enhancer Trained Models”

DNABERT-Enhancer Trained Models

Rekha Sathian, Pratik Dutta, Ferhat Ay, Ramana V. Davuluri

ORCID match Zenodo (CERN European Organization for Nuclear Research) · 2026 · Found in ORCID, OpenAlex

DOI: 10.5281/zenodo.19157566

Choose for “DNABERT-Enhancer Trained Models”

TSProm: Deciphering the Genomic Context of Tissue Specificity

Pallavi Surana, Pratik Dutta, Nimisha Papineni, Rekha Sathian, Zhihan Zhou, Han Liu, Ramana V. Davuluri

ORCID match bioRxiv : the preprint server for biology · 2025 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1101/2025.10.30.685161

Choose for “TSProm: Deciphering the Genomic Context of Tissue Specificity”

Immunoglobulin superfamily 3 (Igsf3) function is dispensable for brain development.

Carolina Cocito, Chaomei Xiang, Meng Huang, Tatyana Gongora, Pallavi Surana, Ramana V. Davuluri, Nadia Dahmane, Jeffrey P. Greenfield

ORCID match Scientific reports · 2025 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1038/s41598-024-79349-4

Choose for “Immunoglobulin superfamily 3 (Igsf3) function is dispensable for brain development.”

Designing a time-dependent therapeutic strategy using CDK4/6 inhibitors in an intracranial ATRT model

Brice Martin, Sergio W. Guadix, Rekha Sathian, Madeline Laramee, Abhinav Pandey, Ishani Ray, Amy Wang, Ramana V. Davuluri, Craig J. Thomas, Nadia Dahmane, Mark M. Souweidane

ORCID match Neuro-Oncology · 2025 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1093/neuonc/noae262

Choose for “Designing a time-dependent therapeutic strategy using CDK4/6 inhibitors in an intracranial ATRT model”

DeepVRegulome: DNABERT-based deep-learning framework for predicting the functional impact of short genomic variants on the human regulome

ORCID match Arxiv · 2025 · Found in ORCID

Choose for “DeepVRegulome: DNABERT-based deep-learning framework for predicting the functional impact of short genomic variants on the human regulome”

DeepVRegulome: DNABERT-based deep-learning framework for predicting the functional impact of short genomic variants on the human regulome

Pratik Dutta, Matthew B. Obusan, Rekha Sathian, Max Chao, Pallavi Surana, Nimisha Papineni, Yanrong Ji, Zhi Quan Zhou, Han Liu, Alisa Yurovsky, Ramana V. Davuluri

ORCID match ArXiv.org · 2025 · Found in ORCID, OpenAlex

DOI: 10.48550/arxiv.2511.09026

Choose for “DeepVRegulome: DNABERT-based deep-learning framework for predicting the functional impact of short genomic variants on the human regulome”

DNABERT-S: pioneering species differentiation with species-aware DNA embeddings

Zhihan Zhou, Weimin Wu, Harrison Ho, Jiayi Wang, Lizhen Shi, Ramana V. Davuluri, Zhong Wang, Han Liu

ORCID match Bioinformatics · 2025 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1093/bioinformatics/btaf188

Choose for “DNABERT-S: pioneering species differentiation with species-aware DNA embeddings”

Augmenting DNABERT Embeddings with Multimodal DNA Features for Improved Regulatory Sequence Interpretation

ORCID match MACHINE LEARNING IN COMPUTATIONAL BIOLOGY · 2025 · Found in ORCID

Choose for “Augmenting DNABERT Embeddings with Multimodal DNA Features for Improved Regulatory Sequence Interpretation”

A community effort to optimize sequence-based deep learning models of gene regulation

Abdul Muntakim Rafi, Daria Nogina, Dmitry Penzar, Dohoon Lee, Danyeong Lee, N. S. KIM, Sangyeup Kim, Dohyeon Kim, Yeojin Shin, Il‐Youp Kwak, G. A. Meshcheryakov, Andrey Lando, Arsenii Zinkevich, Byeongchan Kim, Juhyun Lee, Taein Kang, Eeshit Dhaval Vaishnav, Payman Yadollahpour, Susanne Bornelöv, Fredrik Svensson, Maria‐Anna Trapotsi, Duc Tran, Tin Nguyen, Xinming Tu, Wuwei Zhang, Wei Qiu, Rohan Ghotra, Yiyang Yu, Ethan Labelson, Aayush Prakash, Ashwin Narayanan, Peter K. Koo, Xiaoting Chen, David T. Jones, Michele Tinti, Yuanfang Guan, Maolin Ding, Ken Chen, Yuedong Yang, Ke Ding, Gunjan Dixit, Jiayu Wen, Zhihan Zhou, Pratik Dutta, Rekha Sathian, Pallavi Surana, Yanrong Ji, Han Liu, Ramana V. Davuluri, Yu Hiratsuka, Mao Takatsu, Tsai‐Min Chen, Chih-Han Huang, Hsuan-Kai Wang, Edward S.C. Shih, Sz-Hau Chen, Chih‐Hsun Wu, Jhih-Yu Chen, Kuei-Lin Huang, Ibrahim Alsaggaf, P W Greaves, Carl Barton, Cen Wan, Nicholas Allen Baclig Abad, Cindy Körner, Lars Feuerbach, Benedikt Brors, Yichao Li, Sebastian Röner, Pyaree Mohan Dash, Max Schubach, Onuralp Söylemez, Andreas Møller, Gabija Kavaliauskaite, Jesper Grud Skat Madsen, Zhixiu Lu, Owen Queen, Ashley Babjac, Scott Emrich, Konstantinos Kardamiliotis, Konstantinos Kyriakidis, Andigoni Malousi, Ashok Palaniappan, Krishna Kant Gupta, Prasanna Kumar Saravanam, Jake Bradford, Dimitri Perrin, Robert Salomone, Carl Schmitz, Chen JiaXing, Wang JingZhe, Yang AiWei, Sun Kim, Jake Albrecht, Aviv Regev, Wuming Gong, Ivan V. Kulakovskiy, Pablo Meyer, Carl G. de Boer

ORCID match NATURE BIOTECHNOLOGY · 2025 · Found in ORCID, OpenAlex

DOI: 10.1038/s41587-024-02414-w

Choose for “A community effort to optimize sequence-based deep learning models of gene regulation”

Onco-fetal protein Nogo-A restricts human and mouse glioma vascularization and growth via VEGF-Notch-hippo-metabolic signaling

Marc Schwab, Moheb Ghobrial, Jorge L. Jimenez-Macias, Michał Beffinger, Yanrong Ji, Andrin Wacker, Hidekiyo Harada, Jau-Ye Shiu, Oskar Novitzki, Ignazio de Trizio, Francesco Girolamo, Mariella Errede, Tobias Weiß, Dorothee Gramatzki, Miguel Maurer, Oliver Weinmann, Viola Vogel, Ivan Radovanovic, Martin E. Schwab, Nadia Dahmane, Jeffrey P. Greenfield, Antonio Chiocca, Daniela Virgintino, Michael Weller, Johannes vom Berg, Johannes Vogel, Ramana V. Davuluri, Karl Frei, Ralph Schlapbach, Katrien De Bock, Philippe P. Monnier, Sean Lawler, Thomas Wälchli

ORCID match bioRxiv · 2024 · Found in ORCID, OpenAlex

DOI: 10.1101/2024.10.02.616320

Choose for “Onco-fetal protein Nogo-A restricts human and mouse glioma vascularization and growth via VEGF-Notch-hippo-metabolic signaling”

MODL-02. ESTABLISHING THE TIME-DEPENDENCE OF CDK4/6 INHIBITOR EFFICACY IN PEDIATRIC BRAIN TUMORS AND FEASIBILITY OF METRONOMIC INTRATHECAL DELIVERY IN A PRECLINICAL MODEL

Brice Martin, Sergio W. Guadix, Rekha Sathian, Madeline Laramee, Abhinav Pandey, Ishani Ray, Selina Chen‐Kiang, Amy Wang, Ramana V. Davuluri, Nadia Dahmane, Craig J. Thomas, Mark M. Souweidane

ORCID match Neuro-Oncology · 2024 · Found in ORCID, OpenAlex

DOI: 10.1093/neuonc/noae064.746

Choose for “MODL-02. ESTABLISHING THE TIME-DEPENDENCE OF CDK4/6 INHIBITOR EFFICACY IN PEDIATRIC BRAIN TUMORS AND FEASIBILITY OF METRONOMIC INTRATHECAL DELIVERY IN A PRECLINICAL MODEL”

DNABERT-S: Pioneering Species Differentiation with Species-Aware DNA Embeddings

ORCID match Arxiv · 2024 · Found in ORCID

Choose for “DNABERT-S: Pioneering Species Differentiation with Species-Aware DNA Embeddings”

DNABERT-2: EFFICIENT FOUNDATION MODEL AND BENCHMARK FOR MULTI-SPECIES GENOMES

ORCID match Arxiv · 2024 · Found in ORCID

Choose for “DNABERT-2: EFFICIENT FOUNDATION MODEL AND BENCHMARK FOR MULTI-SPECIES GENOMES”

Biased signaling by mutant EGFR underlies dependence on PKCα in lung adenocarcinoma.

Mojtaba Sadeghi, Mohamed Salama, Sam B Chiappone, Amy Huang, Andrew E Resnick, Manoj Kandpal, Christopher J. Clarke, John D. Haley, Ramana V. Davuluri, Yusuf A. Hannun

ORCID match Cell reports · 2024 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1016/j.celrep.2024.115026

Choose for “Biased signaling by mutant EGFR underlies dependence on PKCα in lung adenocarcinoma.”

Transcriptomic analyses reveal key molecular pathways responsible for the vulnerability of corticospinal motor neurons that lack Alsin function in ALS

ORCID match MUSCLE & NERVE · 2023 · Found in ORCID

Choose for “Transcriptomic analyses reveal key molecular pathways responsible for the vulnerability of corticospinal motor neurons that lack Alsin function in ALS”

Supplementary Tables from FTO-Dependent <i>N</i><sup>6</sup>-Methyladenosine Modifications Inhibit Ovarian Cancer Stem Cell Self-Renewal by Blocking cAMP Signaling

Hao Huang, Yinu Wang, Manoj Kandpal, Guangyuan Zhao, Horacio Cárdenas, Yanrong Ji, Anusha Chaparala, Edward J. Tanner, Jianjun Chen, Ramana V. Davuluri, Daniela Matei

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/0008-5472.22426420

Choose for “Supplementary Tables from FTO-Dependent <i>N</i><sup>6</sup>-Methyladenosine Modifications Inhibit Ovarian Cancer Stem Cell Self-Renewal by Blocking cAMP Signaling”

Supplementary Tables from FTO-Dependent <i>N</i><sup>6</sup>-Methyladenosine Modifications Inhibit Ovarian Cancer Stem Cell Self-Renewal by Blocking cAMP Signaling

Hao Huang, Yinu Wang, Manoj Kandpal, Guangyuan Zhao, Horacio Cárdenas, Yanrong Ji, Anusha Chaparala, Edward J. Tanner, Jianjun Chen, Ramana V. Davuluri, Daniela Matei

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/0008-5472.22426420.v1

Choose for “Supplementary Tables from FTO-Dependent <i>N</i><sup>6</sup>-Methyladenosine Modifications Inhibit Ovarian Cancer Stem Cell Self-Renewal by Blocking cAMP Signaling”

Supplementary Tables 3-9 from Single-Nucleotide Polymorphisms Inside MicroRNA Target Sites Influence Tumor Susceptibility

Milena S. Nicoloso, Hao Sun, Riccardo Spizzo, Hyunsoo Kim, Priyankara Wickramasinghe, Masayoshi Shimizu, Sylwia E. Wojcik, Jana Ferdin, Tanja Kunej, Lianchun Xiao, Siranoush Manoukian, Giorgio Secreto, Fernando Ravagnani, Xuemei Wang, Paolo Radice, Carlo M. Croce, Ramana V. Davuluri, George A. Calin

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/0008-5472.22386440.v1

Choose for “Supplementary Tables 3-9 from Single-Nucleotide Polymorphisms Inside MicroRNA Target Sites Influence Tumor Susceptibility”

Supplementary Tables 3-9 from Single-Nucleotide Polymorphisms Inside MicroRNA Target Sites Influence Tumor Susceptibility

Milena S. Nicoloso, Hao Sun, Riccardo Spizzo, Hyunsoo Kim, Priyankara Wickramasinghe, Masayoshi Shimizu, Sylwia E. Wojcik, Jana Ferdin, Tanja Kunej, Lianchun Xiao, Siranoush Manoukian, Giorgio Secreto, Fernando Ravagnani, Xuemei Wang, Paolo Radice, Carlo M. Croce, Ramana V. Davuluri, George A. Calin

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/0008-5472.22386440

Choose for “Supplementary Tables 3-9 from Single-Nucleotide Polymorphisms Inside MicroRNA Target Sites Influence Tumor Susceptibility”

Supplementary Tables 1 and 2, Figures 1-9 from Sprouty2 Drives Drug Resistance and Proliferation in Glioblastoma

Alice M. Walsh, Gurpreet S. Kapoor, Janine M. Buonato, Lijoy K. Mathew, Yingtao Bi, Ramana V. Davuluri, Maria Martinez‐Lage, M. Celeste Simon, Donald M. O’Rourke, Matthew J. Lazzara

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/1541-7786.22515090

Choose for “Supplementary Tables 1 and 2, Figures 1-9 from Sprouty2 Drives Drug Resistance and Proliferation in Glioblastoma”

Supplementary Tables 1 and 2, Figures 1-9 from Sprouty2 Drives Drug Resistance and Proliferation in Glioblastoma

Alice M. Walsh, Gurpreet S. Kapoor, Janine M. Buonato, Lijoy K. Mathew, Yingtao Bi, Ramana V. Davuluri, Maria Martinez‐Lage, M. Celeste Simon, Donald M. O’Rourke, Matthew J. Lazzara

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/1541-7786.22515090.v1

Choose for “Supplementary Tables 1 and 2, Figures 1-9 from Sprouty2 Drives Drug Resistance and Proliferation in Glioblastoma”

Supplementary Table from Frizzled-7 Identifies Platinum-Tolerant Ovarian Cancer Cells Susceptible to Ferroptosis

Yinu Wang, Guangyuan Zhao, Salvatore Condello, Hao Huang, Horacio Cárdenas, Edward J. Tanner, Jianjun Wei, Yanrong Ji, Junjie Li, Yuying Tan, Ramana V. Davuluri, Marcus E. Peter, Ji‐Xin Cheng, Daniela Matei

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/0008-5472.22427376

Choose for “Supplementary Table from Frizzled-7 Identifies Platinum-Tolerant Ovarian Cancer Cells Susceptible to Ferroptosis”

Supplementary Table from Frizzled-7 Identifies Platinum-Tolerant Ovarian Cancer Cells Susceptible to Ferroptosis

Yinu Wang, Guangyuan Zhao, Salvatore Condello, Hao Huang, Horacio Cárdenas, Edward J. Tanner, Jianjun Wei, Yanrong Ji, Junjie Li, Yuying Tan, Ramana V. Davuluri, Marcus E. Peter, Ji‐Xin Cheng, Daniela Matei

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/0008-5472.22427376.v1

Choose for “Supplementary Table from Frizzled-7 Identifies Platinum-Tolerant Ovarian Cancer Cells Susceptible to Ferroptosis”

Supplementary Table S1 from Prognostic DNA Methylation Biomarkers in Ovarian Cancer

Susan Wei, Curtis Balch, Henry Paik, Yoo-Sung Kim, Rae Lynn Baldwin, Sandya Liyanarachchi, Lang Li, Zailong Wang, Joseph C. Wan, Ramana V. Davuluri, Beth Y. Karlan, Gillian Gifford, Robert Brown, Sun Kim, Tim H-M. Huang, Kenneth P. Nephew

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/1078-0432.22441390.v1

Choose for “Supplementary Table S1 from Prognostic DNA Methylation Biomarkers in Ovarian Cancer”

Supplementary Table S1 from Prognostic DNA Methylation Biomarkers in Ovarian Cancer

Susan Wei, Curtis Balch, Henry Paik, Yoo-Sung Kim, Rae Lynn Baldwin, Sandya Liyanarachchi, Lang Li, Zailong Wang, Joseph C. Wan, Ramana V. Davuluri, Beth Y. Karlan, Gillian Gifford, Robert Brown, Sun Kim, Tim H-M. Huang, Kenneth P. Nephew

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/1078-0432.22441390

Choose for “Supplementary Table S1 from Prognostic DNA Methylation Biomarkers in Ovarian Cancer”

Supplementary Table Legends 1-9, Figures 1-4, Methods from Single-Nucleotide Polymorphisms Inside MicroRNA Target Sites Influence Tumor Susceptibility

Milena S. Nicoloso, Hao Sun, Riccardo Spizzo, Hyunsoo Kim, Priyankara Wickramasinghe, Masayoshi Shimizu, Sylwia E. Wojcik, Jana Ferdin, Tanja Kunej, Lianchun Xiao, Siranoush Manoukian, Giorgio Secreto, Fernando Ravagnani, Xuemei Wang, Paolo Radice, Carlo M. Croce, Ramana V. Davuluri, George A. Calin

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/0008-5472.22386443.v1

Choose for “Supplementary Table Legends 1-9, Figures 1-4, Methods from Single-Nucleotide Polymorphisms Inside MicroRNA Target Sites Influence Tumor Susceptibility”

Supplementary Table Legends 1-9, Figures 1-4, Methods from Single-Nucleotide Polymorphisms Inside MicroRNA Target Sites Influence Tumor Susceptibility

Milena S. Nicoloso, Hao Sun, Riccardo Spizzo, Hyunsoo Kim, Priyankara Wickramasinghe, Masayoshi Shimizu, Sylwia E. Wojcik, Jana Ferdin, Tanja Kunej, Lianchun Xiao, Siranoush Manoukian, Giorgio Secreto, Fernando Ravagnani, Xuemei Wang, Paolo Radice, Carlo M. Croce, Ramana V. Davuluri, George A. Calin

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/0008-5472.22386443

Choose for “Supplementary Table Legends 1-9, Figures 1-4, Methods from Single-Nucleotide Polymorphisms Inside MicroRNA Target Sites Influence Tumor Susceptibility”

Supplementary Table 2 from Single-Nucleotide Polymorphisms Inside MicroRNA Target Sites Influence Tumor Susceptibility

Milena S. Nicoloso, Hao Sun, Riccardo Spizzo, Hyunsoo Kim, Priyankara Wickramasinghe, Masayoshi Shimizu, Sylwia E. Wojcik, Jana Ferdin, Tanja Kunej, Lianchun Xiao, Siranoush Manoukian, Giorgio Secreto, Fernando Ravagnani, Xuemei Wang, Paolo Radice, Carlo M. Croce, Ramana V. Davuluri, George A. Calin

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/0008-5472.22386446

Choose for “Supplementary Table 2 from Single-Nucleotide Polymorphisms Inside MicroRNA Target Sites Influence Tumor Susceptibility”

Supplementary Table 2 from Single-Nucleotide Polymorphisms Inside MicroRNA Target Sites Influence Tumor Susceptibility

Milena S. Nicoloso, Hao Sun, Riccardo Spizzo, Hyunsoo Kim, Priyankara Wickramasinghe, Masayoshi Shimizu, Sylwia E. Wojcik, Jana Ferdin, Tanja Kunej, Lianchun Xiao, Siranoush Manoukian, Giorgio Secreto, Fernando Ravagnani, Xuemei Wang, Paolo Radice, Carlo M. Croce, Ramana V. Davuluri, George A. Calin

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/0008-5472.22386446.v1

Choose for “Supplementary Table 2 from Single-Nucleotide Polymorphisms Inside MicroRNA Target Sites Influence Tumor Susceptibility”

Supplementary Table 1 from Single-Nucleotide Polymorphisms Inside MicroRNA Target Sites Influence Tumor Susceptibility

Milena S. Nicoloso, Hao Sun, Riccardo Spizzo, Hyunsoo Kim, Priyankara Wickramasinghe, Masayoshi Shimizu, Sylwia E. Wojcik, Jana Ferdin, Tanja Kunej, Lianchun Xiao, Siranoush Manoukian, Giorgio Secreto, Fernando Ravagnani, Xuemei Wang, Paolo Radice, Carlo M. Croce, Ramana V. Davuluri, George A. Calin

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/0008-5472.22386449.v1

Choose for “Supplementary Table 1 from Single-Nucleotide Polymorphisms Inside MicroRNA Target Sites Influence Tumor Susceptibility”

Supplementary Table 1 from Single-Nucleotide Polymorphisms Inside MicroRNA Target Sites Influence Tumor Susceptibility

Milena S. Nicoloso, Hao Sun, Riccardo Spizzo, Hyunsoo Kim, Priyankara Wickramasinghe, Masayoshi Shimizu, Sylwia E. Wojcik, Jana Ferdin, Tanja Kunej, Lianchun Xiao, Siranoush Manoukian, Giorgio Secreto, Fernando Ravagnani, Xuemei Wang, Paolo Radice, Carlo M. Croce, Ramana V. Davuluri, George A. Calin

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/0008-5472.22386449

Choose for “Supplementary Table 1 from Single-Nucleotide Polymorphisms Inside MicroRNA Target Sites Influence Tumor Susceptibility”

Supplementary Table 1 from Loss of Estrogen Receptor Signaling Triggers Epigenetic Silencing of Downstream Targets in Breast Cancer

Yu‐Wei Leu, Pearlly S. Yan, Meiyun Fan, Victor X. Jin, Joseph C. Liu, Edward M. Curran, Wade V. Welshons, Susan Wei, Ramana V. Davuluri, Christoph Plass, Kenneth P. Nephew, Tim H-M. Huang

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/0008-5472.22363263.v1

Choose for “Supplementary Table 1 from Loss of Estrogen Receptor Signaling Triggers Epigenetic Silencing of Downstream Targets in Breast Cancer”

Supplementary Table 1 from Loss of Estrogen Receptor Signaling Triggers Epigenetic Silencing of Downstream Targets in Breast Cancer

Yu‐Wei Leu, Pearlly S. Yan, Meiyun Fan, Victor X. Jin, Joseph C. Liu, Edward M. Curran, Wade V. Welshons, Susan Wei, Ramana V. Davuluri, Christoph Plass, Kenneth P. Nephew, Tim H-M. Huang

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/0008-5472.22363263

Choose for “Supplementary Table 1 from Loss of Estrogen Receptor Signaling Triggers Epigenetic Silencing of Downstream Targets in Breast Cancer”

Supplementary Methods from FTO-Dependent <i>N</i><sup>6</sup>-Methyladenosine Modifications Inhibit Ovarian Cancer Stem Cell Self-Renewal by Blocking cAMP Signaling

Hao Huang, Yinu Wang, Manoj Kandpal, Guangyuan Zhao, Horacio Cárdenas, Yanrong Ji, Anusha Chaparala, Edward J. Tanner, Jianjun Chen, Ramana V. Davuluri, Daniela Matei

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/0008-5472.22426423.v1

Choose for “Supplementary Methods from FTO-Dependent <i>N</i><sup>6</sup>-Methyladenosine Modifications Inhibit Ovarian Cancer Stem Cell Self-Renewal by Blocking cAMP Signaling”

Supplementary Methods from FTO-Dependent <i>N</i><sup>6</sup>-Methyladenosine Modifications Inhibit Ovarian Cancer Stem Cell Self-Renewal by Blocking cAMP Signaling

Hao Huang, Yinu Wang, Manoj Kandpal, Guangyuan Zhao, Horacio Cárdenas, Yanrong Ji, Anusha Chaparala, Edward J. Tanner, Jianjun Chen, Ramana V. Davuluri, Daniela Matei

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/0008-5472.22426423

Choose for “Supplementary Methods from FTO-Dependent <i>N</i><sup>6</sup>-Methyladenosine Modifications Inhibit Ovarian Cancer Stem Cell Self-Renewal by Blocking cAMP Signaling”

Supplementary Material and Methods from Frizzled-7 Identifies Platinum-Tolerant Ovarian Cancer Cells Susceptible to Ferroptosis

Yinu Wang, Guangyuan Zhao, Salvatore Condello, Hao Huang, Horacio Cárdenas, Edward J. Tanner, Jianjun Wei, Yanrong Ji, Junjie Li, Yuying Tan, Ramana V. Davuluri, Marcus E. Peter, Ji‐Xin Cheng, Daniela Matei

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/0008-5472.22427379

Choose for “Supplementary Material and Methods from Frizzled-7 Identifies Platinum-Tolerant Ovarian Cancer Cells Susceptible to Ferroptosis”

Supplementary Material and Methods from Frizzled-7 Identifies Platinum-Tolerant Ovarian Cancer Cells Susceptible to Ferroptosis

Yinu Wang, Guangyuan Zhao, Salvatore Condello, Hao Huang, Horacio Cárdenas, Edward J. Tanner, Jianjun Wei, Yanrong Ji, Junjie Li, Yuying Tan, Ramana V. Davuluri, Marcus E. Peter, Ji‐Xin Cheng, Daniela Matei

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/0008-5472.22427379.v1

Choose for “Supplementary Material and Methods from Frizzled-7 Identifies Platinum-Tolerant Ovarian Cancer Cells Susceptible to Ferroptosis”

Supplementary Figures from Frizzled-7 Identifies Platinum-Tolerant Ovarian Cancer Cells Susceptible to Ferroptosis

Yinu Wang, Guangyuan Zhao, Salvatore Condello, Hao Huang, Horacio Cárdenas, Edward J. Tanner, Jianjun Wei, Yanrong Ji, Junjie Li, Yuying Tan, Ramana V. Davuluri, Marcus E. Peter, Ji‐Xin Cheng, Daniela Matei

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/0008-5472.22427382

Choose for “Supplementary Figures from Frizzled-7 Identifies Platinum-Tolerant Ovarian Cancer Cells Susceptible to Ferroptosis”

Supplementary Figures from Frizzled-7 Identifies Platinum-Tolerant Ovarian Cancer Cells Susceptible to Ferroptosis

Yinu Wang, Guangyuan Zhao, Salvatore Condello, Hao Huang, Horacio Cárdenas, Edward J. Tanner, Jianjun Wei, Yanrong Ji, Junjie Li, Yuying Tan, Ramana V. Davuluri, Marcus E. Peter, Ji‐Xin Cheng, Daniela Matei

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/0008-5472.22427382.v1

Choose for “Supplementary Figures from Frizzled-7 Identifies Platinum-Tolerant Ovarian Cancer Cells Susceptible to Ferroptosis”

Supplementary Figures from FTO-Dependent <i>N</i><sup>6</sup>-Methyladenosine Modifications Inhibit Ovarian Cancer Stem Cell Self-Renewal by Blocking cAMP Signaling

Hao Huang, Yinu Wang, Manoj Kandpal, Guangyuan Zhao, Horacio Cárdenas, Yanrong Ji, Anusha Chaparala, Edward J. Tanner, Jianjun Chen, Ramana V. Davuluri, Daniela Matei

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/0008-5472.22426426.v1

Choose for “Supplementary Figures from FTO-Dependent <i>N</i><sup>6</sup>-Methyladenosine Modifications Inhibit Ovarian Cancer Stem Cell Self-Renewal by Blocking cAMP Signaling”

Supplementary Figures from FTO-Dependent <i>N</i><sup>6</sup>-Methyladenosine Modifications Inhibit Ovarian Cancer Stem Cell Self-Renewal by Blocking cAMP Signaling

Hao Huang, Yinu Wang, Manoj Kandpal, Guangyuan Zhao, Horacio Cárdenas, Yanrong Ji, Anusha Chaparala, Edward J. Tanner, Jianjun Chen, Ramana V. Davuluri, Daniela Matei

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/0008-5472.22426426

Choose for “Supplementary Figures from FTO-Dependent <i>N</i><sup>6</sup>-Methyladenosine Modifications Inhibit Ovarian Cancer Stem Cell Self-Renewal by Blocking cAMP Signaling”

Supplementary Figure 1 from MNK Inhibition Disrupts Mesenchymal Glioma Stem Cells and Prolongs Survival in a Mouse Model of Glioblastoma

Jonathan B. Bell, Frank Eckerdt, Kristen Alley, Lisa P. Magnusson, Hridi Hussain, Yingtao Bi, Ahmet Arslan, Jessica Clymer, Angel A. Alvarez, Stewart Goldman, Shi‐Yuan Cheng, Ichiro Nakano, Craig Horbinski, Ramana V. Davuluri, C. David James, Leonidas C. Platanias

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/1541-7786.22514899.v1

Choose for “Supplementary Figure 1 from MNK Inhibition Disrupts Mesenchymal Glioma Stem Cells and Prolongs Survival in a Mouse Model of Glioblastoma”

Supplementary Figure 1 from MNK Inhibition Disrupts Mesenchymal Glioma Stem Cells and Prolongs Survival in a Mouse Model of Glioblastoma

Jonathan B. Bell, Frank Eckerdt, Kristen Alley, Lisa P. Magnusson, Hridi Hussain, Yingtao Bi, Ahmet Arslan, Jessica Clymer, Angel A. Alvarez, Stewart Goldman, Shi‐Yuan Cheng, Ichiro Nakano, Craig Horbinski, Ramana V. Davuluri, C. David James, Leonidas C. Platanias

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/1541-7786.22514899

Choose for “Supplementary Figure 1 from MNK Inhibition Disrupts Mesenchymal Glioma Stem Cells and Prolongs Survival in a Mouse Model of Glioblastoma”

Supplemental Figure 5 from Combining Anti-Mir-155 with Chemotherapy for the Treatment of Lung Cancers

Katrien Van Roosbroeck, Francesca Fanini, Tetsuro Setoyama, Cristina Ivan, Cristian Rodriguez-Aguayo, Enrique Fuentes‐Mattei, Lianchun Xiao, Ivan Vannini, Roxana S. Redis, Lucilla D’Abundo, Xinna Zhang, Milena S. Nicoloso, Simona Rossi, Vianey González-Villasana, Rajesha Rupaimoole, Manuela Ferracin, Fortunato Morabito, Antonino Neri, Peter P. Ruvolo, Vivian Ruvolo, Chad V. Pecot, Dino Amadori, Lynne V. Abruzzo, Steliana Calin, Xuemei Wang, M. James You, Alessandra Ferrajoli, Robert Z. Orlowski, William Plunkett, Tara M. Lichtenberg, Ramana V. Davuluri, Ioana Berindan‐Neagoe, Massimo Negrini, Ignacio I. Wistuba, Hagop M. Kantarjian, Anil K. Sood, Gabriel Lopez‐Berestein, Michael J. Keating, Muller Fabbri, George A. Călin

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/1078-0432.22463082

Choose for “Supplemental Figure 5 from Combining Anti-Mir-155 with Chemotherapy for the Treatment of Lung Cancers”

Supplemental Figure 5 from Combining Anti-Mir-155 with Chemotherapy for the Treatment of Lung Cancers

Katrien Van Roosbroeck, Francesca Fanini, Tetsuro Setoyama, Cristina Ivan, Cristian Rodriguez-Aguayo, Enrique Fuentes‐Mattei, Lianchun Xiao, Ivan Vannini, Roxana S. Redis, Lucilla D’Abundo, Xinna Zhang, Milena S. Nicoloso, Simona Rossi, Vianey González-Villasana, Rajesha Rupaimoole, Manuela Ferracin, Fortunato Morabito, Antonino Neri, Peter P. Ruvolo, Vivian Ruvolo, Chad V. Pecot, Dino Amadori, Lynne V. Abruzzo, Steliana Calin, Xuemei Wang, M. James You, Alessandra Ferrajoli, Robert Z. Orlowski, William Plunkett, Tara M. Lichtenberg, Ramana V. Davuluri, Ioana Berindan‐Neagoe, Massimo Negrini, Ignacio I. Wistuba, Hagop M. Kantarjian, Anil K. Sood, Gabriel Lopez‐Berestein, Michael J. Keating, Muller Fabbri, George A. Călin

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/1078-0432.22463082.v1

Choose for “Supplemental Figure 5 from Combining Anti-Mir-155 with Chemotherapy for the Treatment of Lung Cancers”

Supplemental Figure 4 from Combining Anti-Mir-155 with Chemotherapy for the Treatment of Lung Cancers

Katrien Van Roosbroeck, Francesca Fanini, Tetsuro Setoyama, Cristina Ivan, Cristian Rodriguez-Aguayo, Enrique Fuentes‐Mattei, Lianchun Xiao, Ivan Vannini, Roxana S. Redis, Lucilla D’Abundo, Xinna Zhang, Milena S. Nicoloso, Simona Rossi, Vianey González-Villasana, Rajesha Rupaimoole, Manuela Ferracin, Fortunato Morabito, Antonino Neri, Peter P. Ruvolo, Vivian Ruvolo, Chad V. Pecot, Dino Amadori, Lynne V. Abruzzo, Steliana Calin, Xuemei Wang, M. James You, Alessandra Ferrajoli, Robert Z. Orlowski, William Plunkett, Tara M. Lichtenberg, Ramana V. Davuluri, Ioana Berindan-Neagoe, Massimo Negrini, Ignacio I. Wistuba, Hagop M. Kantarjian, Anil K. Sood, Gabriel Lopez‐Berestein, Michael J. Keating, Muller Fabbri, George A. Călin

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/1078-0432.22463085.v1

Choose for “Supplemental Figure 4 from Combining Anti-Mir-155 with Chemotherapy for the Treatment of Lung Cancers”

Supplemental Figure 4 from Combining Anti-Mir-155 with Chemotherapy for the Treatment of Lung Cancers

Katrien Van Roosbroeck, Francesca Fanini, Tetsuro Setoyama, Cristina Ivan, Cristian Rodriguez-Aguayo, Enrique Fuentes‐Mattei, Lianchun Xiao, Ivan Vannini, Roxana S. Redis, Lucilla D’Abundo, Xinna Zhang, Milena S. Nicoloso, Simona Rossi, Vianey González-Villasana, Rajesha Rupaimoole, Manuela Ferracin, Fortunato Morabito, Antonino Neri, Peter P. Ruvolo, Vivian Ruvolo, Chad V. Pecot, Dino Amadori, Lynne V. Abruzzo, Steliana Calin, Xuemei Wang, M. James You, Alessandra Ferrajoli, Robert Z. Orlowski, William Plunkett, Tara M. Lichtenberg, Ramana V. Davuluri, Ioana Berindan-Neagoe, Massimo Negrini, Ignacio I. Wistuba, Hagop M. Kantarjian, Anil K. Sood, Gabriel Lopez‐Berestein, Michael J. Keating, Muller Fabbri, George A. Călin

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/1078-0432.22463085

Choose for “Supplemental Figure 4 from Combining Anti-Mir-155 with Chemotherapy for the Treatment of Lung Cancers”

Supplemental Figure 3 from Combining Anti-Mir-155 with Chemotherapy for the Treatment of Lung Cancers

Katrien Van Roosbroeck, Francesca Fanini, Tetsuro Setoyama, Cristina Ivan, Cristian Rodriguez-Aguayo, Enrique Fuentes‐Mattei, Lianchun Xiao, Ivan Vannini, Roxana S. Redis, Lucilla D’Abundo, Xinna Zhang, Milena S. Nicoloso, Simona Rossi, Vianey González-Villasana, Rajesha Rupaimoole, Manuela Ferracin, Fortunato Morabito, Antonino Neri, Peter P. Ruvolo, Vivian Ruvolo, Chad V. Pecot, Dino Amadori, Lynne V. Abruzzo, Steliana Calin, Xuemei Wang, M. James You, Alessandra Ferrajoli, Robert Z. Orlowski, William Plunkett, Tara M. Lichtenberg, Ramana V. Davuluri, Ioana Berindan‐Neagoe, Massimo Negrini, Ignacio I. Wistuba, Hagop M. Kantarjian, Anil K. Sood, Gabriel Lopez‐Berestein, Michael J. Keating, Muller Fabbri, George A. Călin

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/1078-0432.22463094

Choose for “Supplemental Figure 3 from Combining Anti-Mir-155 with Chemotherapy for the Treatment of Lung Cancers”

Supplemental Figure 3 from Combining Anti-Mir-155 with Chemotherapy for the Treatment of Lung Cancers

Katrien Van Roosbroeck, Francesca Fanini, Tetsuro Setoyama, Cristina Ivan, Cristian Rodriguez-Aguayo, Enrique Fuentes‐Mattei, Lianchun Xiao, Ivan Vannini, Roxana S. Redis, Lucilla D’Abundo, Xinna Zhang, Milena S. Nicoloso, Simona Rossi, Vianey González-Villasana, Rajesha Rupaimoole, Manuela Ferracin, Fortunato Morabito, Antonino Neri, Peter P. Ruvolo, Vivian Ruvolo, Chad V. Pecot, Dino Amadori, Lynne V. Abruzzo, Steliana Calin, Xuemei Wang, M. James You, Alessandra Ferrajoli, Robert Z. Orlowski, William Plunkett, Tara M. Lichtenberg, Ramana V. Davuluri, Ioana Berindan‐Neagoe, Massimo Negrini, Ignacio I. Wistuba, Hagop M. Kantarjian, Anil K. Sood, Gabriel Lopez‐Berestein, Michael J. Keating, Muller Fabbri, George A. Călin

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/1078-0432.22463094.v1

Choose for “Supplemental Figure 3 from Combining Anti-Mir-155 with Chemotherapy for the Treatment of Lung Cancers”

Supplemental Figure 2 from Combining Anti-Mir-155 with Chemotherapy for the Treatment of Lung Cancers

Katrien Van Roosbroeck, Francesca Fanini, Tetsuro Setoyama, Cristina Ivan, Cristian Rodriguez-Aguayo, Enrique Fuentes‐Mattei, Lianchun Xiao, Ivan Vannini, Roxana S. Redis, Lucilla D’Abundo, Xinna Zhang, Milena S. Nicoloso, Simona Rossi, Vianey González-Villasana, Rajesha Rupaimoole, Manuela Ferracin, Fortunato Morabito, Antonino Neri, Peter P. Ruvolo, Vivian Ruvolo, Chad V. Pecot, Dino Amadori, Lynne V. Abruzzo, Steliana Calin, Xuemei Wang, M. James You, Alessandra Ferrajoli, Robert Z. Orlowski, William Plunkett, Tara M. Lichtenberg, Ramana V. Davuluri, Ioana Berindan‐Neagoe, Massimo Negrini, Ignacio I. Wistuba, Hagop M. Kantarjian, Anil K. Sood, Gabriel Lopez‐Berestein, Michael J. Keating, Muller Fabbri, George A. Călin

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/1078-0432.22463097.v1

Choose for “Supplemental Figure 2 from Combining Anti-Mir-155 with Chemotherapy for the Treatment of Lung Cancers”

Supplemental Figure 2 from Combining Anti-Mir-155 with Chemotherapy for the Treatment of Lung Cancers

Katrien Van Roosbroeck, Francesca Fanini, Tetsuro Setoyama, Cristina Ivan, Cristian Rodriguez-Aguayo, Enrique Fuentes‐Mattei, Lianchun Xiao, Ivan Vannini, Roxana S. Redis, Lucilla D’Abundo, Xinna Zhang, Milena S. Nicoloso, Simona Rossi, Vianey González-Villasana, Rajesha Rupaimoole, Manuela Ferracin, Fortunato Morabito, Antonino Neri, Peter P. Ruvolo, Vivian Ruvolo, Chad V. Pecot, Dino Amadori, Lynne V. Abruzzo, Steliana Calin, Xuemei Wang, M. James You, Alessandra Ferrajoli, Robert Z. Orlowski, William Plunkett, Tara M. Lichtenberg, Ramana V. Davuluri, Ioana Berindan‐Neagoe, Massimo Negrini, Ignacio I. Wistuba, Hagop M. Kantarjian, Anil K. Sood, Gabriel Lopez‐Berestein, Michael J. Keating, Muller Fabbri, George A. Călin

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/1078-0432.22463097

Choose for “Supplemental Figure 2 from Combining Anti-Mir-155 with Chemotherapy for the Treatment of Lung Cancers”

Supplemental Figure 1 from Combining Anti-Mir-155 with Chemotherapy for the Treatment of Lung Cancers

Katrien Van Roosbroeck, Francesca Fanini, Tetsuro Setoyama, Cristina Ivan, Cristian Rodriguez-Aguayo, Enrique Fuentes‐Mattei, Lianchun Xiao, Ivan Vannini, Roxana S. Redis, Lucilla D’Abundo, Xinna Zhang, Milena S. Nicoloso, Simona Rossi, Vianey González-Villasana, Rajesha Rupaimoole, Manuela Ferracin, Fortunato Morabito, Antonino Neri, Peter P. Ruvolo, Vivian Ruvolo, Chad V. Pecot, Dino Amadori, Lynne V. Abruzzo, Steliana Calin, Xuemei Wang, M. James You, Alessandra Ferrajoli, Robert Z. Orlowski, William Plunkett, Tara M. Lichtenberg, Ramana V. Davuluri, Ioana Berindan‐Neagoe, Massimo Negrini, Ignacio I. Wistuba, Hagop M. Kantarjian, Anil K. Sood, Gabriel Lopez‐Berestein, Michael J. Keating, Muller Fabbri, George A. Călin

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/1078-0432.22463100

Choose for “Supplemental Figure 1 from Combining Anti-Mir-155 with Chemotherapy for the Treatment of Lung Cancers”

Supplemental Figure 1 from Combining Anti-Mir-155 with Chemotherapy for the Treatment of Lung Cancers

Katrien Van Roosbroeck, Francesca Fanini, Tetsuro Setoyama, Cristina Ivan, Cristian Rodriguez-Aguayo, Enrique Fuentes‐Mattei, Lianchun Xiao, Ivan Vannini, Roxana S. Redis, Lucilla D’Abundo, Xinna Zhang, Milena S. Nicoloso, Simona Rossi, Vianey González-Villasana, Rajesha Rupaimoole, Manuela Ferracin, Fortunato Morabito, Antonino Neri, Peter P. Ruvolo, Vivian Ruvolo, Chad V. Pecot, Dino Amadori, Lynne V. Abruzzo, Steliana Calin, Xuemei Wang, M. James You, Alessandra Ferrajoli, Robert Z. Orlowski, William Plunkett, Tara M. Lichtenberg, Ramana V. Davuluri, Ioana Berindan‐Neagoe, Massimo Negrini, Ignacio I. Wistuba, Hagop M. Kantarjian, Anil K. Sood, Gabriel Lopez‐Berestein, Michael J. Keating, Muller Fabbri, George A. Călin

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/1078-0432.22463100.v1

Choose for “Supplemental Figure 1 from Combining Anti-Mir-155 with Chemotherapy for the Treatment of Lung Cancers”

List of contributors

Anshika Agarwal, Sarah Albogami, Nandadulal Bairagi, K. Balasubramanian, Subhash C. Basak, Emilio Benfenati, Apurba K. Bhattacharjee, Anushka Bhrdwaj, Suman Chakravarti, Pratim Kumar Chattaraj, Samrat Chatterjee, Ramana V. Davuluri, Tathagata Dey, Abhik Ghosh, Indira Ghosh, Giuseppina Gini, Lima Hazarika, Guang Hu, Chiakang Hung, Tajamul Hussain, Yanrong Ji, Isha Joshi, Taushif Khan, Ravina Khandelwal, Pawan Kumar, Shivam Kumar, Min Li, Jie Liao, Claudiu N. Lungu, Subhabrata Majumdar, Rama K. Mishra, Manju Mohan, Ashesh Nandy, Anuraj Nayarisseri, Shahul Nilar, Ranita Pal, Aditi Pande, Guillermo Restrepo, Dipanka Tanu Sarmah, Dwaipayan Sen, Sanjeev K. Singh, Chillamcherla Dhanalakshmi Srija, Revathy Arya Suresh, Muyun Tang, Garima Thakur, Tong Xin, Marjan Vračko, Marjan Vračko, Ze Wang, D. Xu, Guang-Yu Yang

ORCID match Big Data Analytics in Chemoinformatics and Bioinformatics · 2023 · Found in ORCID, OpenAlex

DOI: 10.1016/b978-0-323-85713-0.00037-2

Choose for “List of contributors”

Epithelial-mesenchymal transition: an organizing principle of mammalian regeneration.

Kamila Bedelbaeva, Benjamin Cameron, John Latella, Azamat Aslanukov, Dmitri Gourevitch, Ramana V. Davuluri, Ellen Heber‐Katz

ORCID match Frontiers in cell and developmental biology · 2023 · Found in ORCID, OpenAlex, PubMed

DOI: 10.3389/fcell.2023.1101480

Choose for “Epithelial-mesenchymal transition: an organizing principle of mammalian regeneration.”

Data from Sprouty2 Drives Drug Resistance and Proliferation in Glioblastoma

Alice M. Walsh, Gurpreet S. Kapoor, Janine M. Buonato, Lijoy K. Mathew, Yingtao Bi, Ramana V. Davuluri, Maria Martinez‐Lage, M. Celeste Simon, Donald M. O’Rourke, Matthew J. Lazzara

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/1541-7786.c.6540972.v1

Choose for “Data from Sprouty2 Drives Drug Resistance and Proliferation in Glioblastoma”

Data from Sprouty2 Drives Drug Resistance and Proliferation in Glioblastoma

Alice M. Walsh, Gurpreet S. Kapoor, Janine M. Buonato, Lijoy K. Mathew, Yingtao Bi, Ramana V. Davuluri, Maria Martinez‐Lage, M. Celeste Simon, Donald M. O’Rourke, Matthew J. Lazzara

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/1541-7786.c.6540972

Choose for “Data from Sprouty2 Drives Drug Resistance and Proliferation in Glioblastoma”

Data from Single-Nucleotide Polymorphisms Inside MicroRNA Target Sites Influence Tumor Susceptibility

Milena S. Nicoloso, Hao Sun, Riccardo Spizzo, Hyunsoo Kim, Priyankara Wickramasinghe, Masayoshi Shimizu, Sylwia E. Wojcik, Jana Ferdin, Tanja Kunej, Lianchun Xiao, Siranoush Manoukian, Giorgio Secreto, Fernando Ravagnani, Xuemei Wang, Paolo Radice, Carlo M. Croce, Ramana V. Davuluri, George A. Calin

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/0008-5472.c.6501536.v1

Choose for “Data from Single-Nucleotide Polymorphisms Inside MicroRNA Target Sites Influence Tumor Susceptibility”

Data from Single-Nucleotide Polymorphisms Inside MicroRNA Target Sites Influence Tumor Susceptibility

Milena S. Nicoloso, Hao Sun, Riccardo Spizzo, Hyunsoo Kim, Priyankara Wickramasinghe, Masayoshi Shimizu, Sylwia E. Wojcik, Jana Ferdin, Tanja Kunej, Lianchun Xiao, Siranoush Manoukian, Giorgio Secreto, Fernando Ravagnani, Xuemei Wang, Paolo Radice, Carlo M. Croce, Ramana V. Davuluri, George A. Calin

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/0008-5472.c.6501536

Choose for “Data from Single-Nucleotide Polymorphisms Inside MicroRNA Target Sites Influence Tumor Susceptibility”

Data from Prognostic DNA Methylation Biomarkers in Ovarian Cancer

Susan Wei, Curtis Balch, Henry Paik, Yoo-Sung Kim, Rae Lynn Baldwin, Sandya Liyanarachchi, Lang Li, Zailong Wang, Joseph C. Wan, Ramana V. Davuluri, Beth Y. Karlan, Gillian Gifford, Robert Brown, Sun Kim, Tim H-M. Huang, Kenneth P. Nephew

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/1078-0432.c.6518470

Choose for “Data from Prognostic DNA Methylation Biomarkers in Ovarian Cancer”

Data from Prognostic DNA Methylation Biomarkers in Ovarian Cancer

Susan Wei, Curtis Balch, Henry Paik, Yoo-Sung Kim, Rae Lynn Baldwin, Sandya Liyanarachchi, Lang Li, Zailong Wang, Joseph C. Wan, Ramana V. Davuluri, Beth Y. Karlan, Gillian Gifford, Robert Brown, Sun Kim, Tim H-M. Huang, Kenneth P. Nephew

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/1078-0432.c.6518470.v1

Choose for “Data from Prognostic DNA Methylation Biomarkers in Ovarian Cancer”

Data from MNK Inhibition Disrupts Mesenchymal Glioma Stem Cells and Prolongs Survival in a Mouse Model of Glioblastoma

Jonathan B. Bell, Frank Eckerdt, Kristen Alley, Lisa P. Magnusson, Hridi Hussain, Yingtao Bi, Ahmet Arslan, Jessica Clymer, Angel A. Alvarez, Stewart Goldman, Shi‐Yuan Cheng, Ichiro Nakano, Craig Horbinski, Ramana V. Davuluri, C. David James, Leonidas C. Platanias

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/1541-7786.c.6540925

Choose for “Data from MNK Inhibition Disrupts Mesenchymal Glioma Stem Cells and Prolongs Survival in a Mouse Model of Glioblastoma”

Data from MNK Inhibition Disrupts Mesenchymal Glioma Stem Cells and Prolongs Survival in a Mouse Model of Glioblastoma

Jonathan B. Bell, Frank Eckerdt, Kristen Alley, Lisa P. Magnusson, Hridi Hussain, Yingtao Bi, Ahmet Arslan, Jessica Clymer, Angel A. Alvarez, Stewart Goldman, Shi‐Yuan Cheng, Ichiro Nakano, Craig Horbinski, Ramana V. Davuluri, C. David James, Leonidas C. Platanias

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/1541-7786.c.6540925.v1

Choose for “Data from MNK Inhibition Disrupts Mesenchymal Glioma Stem Cells and Prolongs Survival in a Mouse Model of Glioblastoma”

Data from Loss of Estrogen Receptor Signaling Triggers Epigenetic Silencing of Downstream Targets in Breast Cancer

Yu‐Wei Leu, Pearlly S. Yan, Meiyun Fan, Victor X. Jin, Joseph C. Liu, Edward M. Curran, Wade V. Welshons, Susan Wei, Ramana V. Davuluri, Christoph Plass, Kenneth P. Nephew, Tim H-M. Huang

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/0008-5472.c.6493629.v1

Choose for “Data from Loss of Estrogen Receptor Signaling Triggers Epigenetic Silencing of Downstream Targets in Breast Cancer”

Data from Loss of Estrogen Receptor Signaling Triggers Epigenetic Silencing of Downstream Targets in Breast Cancer

Yu‐Wei Leu, Pearlly S. Yan, Meiyun Fan, Victor X. Jin, Joseph C. Liu, Edward M. Curran, Wade V. Welshons, Susan Wei, Ramana V. Davuluri, Christoph Plass, Kenneth P. Nephew, Tim H-M. Huang

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/0008-5472.c.6493629

Choose for “Data from Loss of Estrogen Receptor Signaling Triggers Epigenetic Silencing of Downstream Targets in Breast Cancer”

Data from Frizzled-7 Identifies Platinum-Tolerant Ovarian Cancer Cells Susceptible to Ferroptosis

Yinu Wang, Guangyuan Zhao, Salvatore Condello, Hao Huang, Horacio Cárdenas, Edward J. Tanner, Jianjun Wei, Yanrong Ji, Junjie Li, Yuying Tan, Ramana V. Davuluri, Marcus E. Peter, Ji‐Xin Cheng, Daniela Matei

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/0008-5472.c.6512649

Choose for “Data from Frizzled-7 Identifies Platinum-Tolerant Ovarian Cancer Cells Susceptible to Ferroptosis”

Data from Frizzled-7 Identifies Platinum-Tolerant Ovarian Cancer Cells Susceptible to Ferroptosis

Yinu Wang, Guangyuan Zhao, Salvatore Condello, Hao Huang, Horacio Cárdenas, Edward J. Tanner, Jianjun Wei, Yanrong Ji, Junjie Li, Yuying Tan, Ramana V. Davuluri, Marcus E. Peter, Ji‐Xin Cheng, Daniela Matei

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/0008-5472.c.6512649.v1

Choose for “Data from Frizzled-7 Identifies Platinum-Tolerant Ovarian Cancer Cells Susceptible to Ferroptosis”

Data from FTO-Dependent <i>N</i><sup>6</sup>-Methyladenosine Modifications Inhibit Ovarian Cancer Stem Cell Self-Renewal by Blocking cAMP Signaling

Hao Huang, Yinu Wang, Manoj Kandpal, Guangyuan Zhao, Horacio Cárdenas, Yanrong Ji, Anusha Chaparala, Edward J. Tanner, Jianjun Chen, Ramana V. Davuluri, Daniela Matei

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/0008-5472.c.6512335

Choose for “Data from FTO-Dependent <i>N</i><sup>6</sup>-Methyladenosine Modifications Inhibit Ovarian Cancer Stem Cell Self-Renewal by Blocking cAMP Signaling”

Data from FTO-Dependent <i>N</i><sup>6</sup>-Methyladenosine Modifications Inhibit Ovarian Cancer Stem Cell Self-Renewal by Blocking cAMP Signaling

Hao Huang, Yinu Wang, Manoj Kandpal, Guangyuan Zhao, Horacio Cárdenas, Yanrong Ji, Anusha Chaparala, Edward J. Tanner, Jianjun Chen, Ramana V. Davuluri, Daniela Matei

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/0008-5472.c.6512335.v1

Choose for “Data from FTO-Dependent <i>N</i><sup>6</sup>-Methyladenosine Modifications Inhibit Ovarian Cancer Stem Cell Self-Renewal by Blocking cAMP Signaling”

Data from Combining Anti-Mir-155 with Chemotherapy for the Treatment of Lung Cancers

Katrien Van Roosbroeck, Francesca Fanini, Tetsuro Setoyama, Cristina Ivan, Cristian Rodriguez-Aguayo, Enrique Fuentes‐Mattei, Lianchun Xiao, Ivan Vannini, Roxana S. Redis, Lucilla D’Abundo, Xinna Zhang, Milena S. Nicoloso, Simona Rossi, Vianey González-Villasana, Rajesha Rupaimoole, Manuela Ferracin, Fortunato Morabito, Antonino Neri, Peter P. Ruvolo, Vivian Ruvolo, Chad V. Pecot, Dino Amadori, Lynne V. Abruzzo, Steliana Calin, Xuemei Wang, M. James You, Alessandra Ferrajoli, Robert Z. Orlowski, William Plunkett, Tara M. Lichtenberg, Ramana V. Davuluri, Ioana Berindan‐Neagoe, Massimo Negrini, Ignacio I. Wistuba, Hagop M. Kantarjian, Anil K. Sood, Gabriel Lopez‐Berestein, Michael J. Keating, Muller Fabbri, George A. Călin

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/1078-0432.c.6525306.v1

Choose for “Data from Combining Anti-Mir-155 with Chemotherapy for the Treatment of Lung Cancers”

Data from Combining Anti-Mir-155 with Chemotherapy for the Treatment of Lung Cancers

Katrien Van Roosbroeck, Francesca Fanini, Tetsuro Setoyama, Cristina Ivan, Cristian Rodriguez-Aguayo, Enrique Fuentes‐Mattei, Lianchun Xiao, Ivan Vannini, Roxana S. Redis, Lucilla D’Abundo, Xinna Zhang, Milena S. Nicoloso, Simona Rossi, Vianey González-Villasana, Rajesha Rupaimoole, Manuela Ferracin, Fortunato Morabito, Antonino Neri, Peter P. Ruvolo, Vivian Ruvolo, Chad V. Pecot, Dino Amadori, Lynne V. Abruzzo, Steliana Calin, Xuemei Wang, M. James You, Alessandra Ferrajoli, Robert Z. Orlowski, William Plunkett, Tara M. Lichtenberg, Ramana V. Davuluri, Ioana Berindan‐Neagoe, Massimo Negrini, Ignacio I. Wistuba, Hagop M. Kantarjian, Anil K. Sood, Gabriel Lopez‐Berestein, Michael J. Keating, Muller Fabbri, George A. Călin

ORCID match · 2023 · Found in ORCID, OpenAlex

DOI: 10.1158/1078-0432.c.6525306

Choose for “Data from Combining Anti-Mir-155 with Chemotherapy for the Treatment of Lung Cancers”

A new robust classifier to detect hot-spots and null-spots in protein–protein interface: validation of binding pocket and identification of inhibitors in in vitro and in vivo models

Yanrong Ji, Xin Tong, Dandan Xu, Jie Liao, Ramana V. Davuluri, Guang‐Yu Yang, Rama K. Mishra

ORCID match Big Data Analytics in Chemoinformatics and Bioinformatics · 2023 · Found in ORCID, OpenAlex

DOI: 10.1016/b978-0-323-85713-0.00022-0

Choose for “A new robust classifier to detect hot-spots and null-spots in protein–protein interface: validation of binding pocket and identification of inhibitors in in vitro and in vivo models”

Peer Review #2 of "Ethanolic extract of Ya-nang (Tiliacora triandra) leaf powder induces apoptosis in cholangiocarcinoma cell lines via induction of hyperacetylation and inhibition of growth signaling (v0.2)"

ORCID match · 2022 · Found in ORCID

DOI: 10.7287/peerj.14518v0.2/reviews/2

Choose for “Peer Review #2 of "Ethanolic extract of Ya-nang (Tiliacora triandra) leaf powder induces apoptosis in cholangiocarcinoma cell lines via induction of hyperacetylation and inhibition of growth signaling (v0.2)"”

Epigenetic priming enhances antitumor immunity in platinum-resistant ovarian cancer.

Siqi Chen, Ping Xie, Matthew Cowan, Hao Huang, Horacio Cárdenas, Russell Keathley, Edward J. Tanner, Gini F. Fleming, John W. Moroney, Alok Pant, Azza M. Akasha, Ramana V. Davuluri, Masha Kocherginsky, Bin Zhang, Daniela Matei

ORCID match The Journal of clinical investigation · 2022 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1172/jci158800

Choose for “Epigenetic priming enhances antitumor immunity in platinum-resistant ovarian cancer.”

Stratified Subsampling Based <i>p</i>-values for Hypothesis Tests in Genomics Research

ORCID match STATISTICS AND APPLICATIONS · 2021 · Found in ORCID

Choose for “Stratified Subsampling Based <i>p</i>-values for Hypothesis Tests in Genomics Research”

RP58 represses transcriptional programs linked to non-neuronal cell identity and glioblastoma subtypes in developing neurons

Chaomei Xiang, Karla K. Frietze, Yingtao Bi, Yanwen Li, Valentina Dal Pozzo, Sharmistha Pal, Noah Alexander, Valérie Baubet, Victoria D’Acunto, Christopher E. Mason, Ramana V. Davuluri, Nadia Dahmane

ORCID match Molecular and cellular biology · 2021 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1128/mcb.00526-20

Choose for “RP58 represses transcriptional programs linked to non-neuronal cell identity and glioblastoma subtypes in developing neurons”

A first-in-human phase 0 clinical study of RNA interference-based spherical nucleic acids in patients with recurrent glioblastoma.

Priya Kumthekar, Caroline H. Ko, Tatjana Paunesku, Karan Dixit, Adam M. Sonabend, Orin Bloch, Matthew C. Tate, Margaret Schwartz, Laura Zuckerman, Ray Lezon, Rimas V. Lukas, Borko Jovanovic, Kathleen McCortney, Howard Colman, Si Chen, Barry Lai, Olga Antipova, Junjing Deng, Luxi Li, Serena Tommasini-Ghelfi, Lisa Hurley, Dusten Unruh, Nitya V. Sharma, Manoj Kandpal, Fotini M. Kouri, Ramana V. Davuluri, Daniel J. Brat, Miguel Muzzio, Mitchell Glass, Vinod Vijayakumar, Jeremy D. Heidel, Francis J. Giles, Ann K. Adams, C. David James, Gayle E. Woloschak, Craig Horbinski, Alexander H. Stegh

ORCID match Science translational medicine · 2021 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1126/scitranslmed.abb3945

Choose for “A first-in-human phase 0 clinical study of RNA interference-based spherical nucleic acids in patients with recurrent glioblastoma.”

Phase II trial of guadecitabine priming and pembrolizumab in platinum resistant recurrent ovarian cancer.

Daniela Matei, Alok Pant, John W. Moroney, Gini F. Fleming, Edward J. Tanner, Wendy M. Swetzig, Jiahui Xu, Horacio Cárdenas, Manoj Kandpal, Andreea Gavrilescu, Siqi Chen, Masha Kocherginsky, Ramana V. Davuluri, Bin Zhang

ORCID match Journal of Clinical Oncology · 2020 · Found in ORCID, OpenAlex

DOI: 10.1200/jco.2020.38.15_suppl.6025

Choose for “Phase II trial of guadecitabine priming and pembrolizumab in platinum resistant recurrent ovarian cancer.”

Phase II trial of guadecitabine priming and pembrolizumab in platinum resistant recurrent ovarian cancer.

ORCID match JOURNAL OF CLINICAL ONCOLOGY · 2020 · Found in ORCID

Choose for “Phase II trial of guadecitabine priming and pembrolizumab in platinum resistant recurrent ovarian cancer.”

Nonlinear partial differential equations and applications: Gene expression profiling of isogenic cells with different TP53 gene dosage reveals numerous genes that are affected by TP53 dosage and identifies CSPG2 as a direct target of p53

ORCID match UNC Libraries · 2020 · Found in ORCID

DOI: 10.17615/4kr6-he79

Choose for “Nonlinear partial differential equations and applications: Gene expression profiling of isogenic cells with different TP53 gene dosage reveals numerous genes that are affected by TP53 dosage and identifies CSPG2 as a direct target of p53”

Identification of Geographic Specific SARS-Cov-2 Mutations by Random Forest Classification and Variable Selection Methods

ORCID match STATISTICS AND APPLICATIONS · 2020 · Found in ORCID

Choose for “Identification of Geographic Specific SARS-Cov-2 Mutations by Random Forest Classification and Variable Selection Methods”

Frizzled-7 Identifies Platinum-Tolerant Ovarian Cancer Cells Susceptible to Ferroptosis.

Yinu Wang, Guangyuan Zhao, Salvatore Condello, Hao Huang, Horacio Cárdenas, Edward J. Tanner, Jian-Jun Wei, Yanrong Ji, Junjie Li, Yuying Tan, Ramana V. Davuluri, Marcus E. Peter, Ji‐Xin Cheng, Daniela Matei

ORCID match Cancer research · 2020 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1158/0008-5472.can-20-1488

Choose for “Frizzled-7 Identifies Platinum-Tolerant Ovarian Cancer Cells Susceptible to Ferroptosis.”

Frizzled-7 Identifies Platinum Tolerant Ovarian Cancer Cells Susceptible to Ferroptosis

Yinu Wang, Guangyuan Zhao, Salvatore Condello, Hao Huang, Horacio Cárdenas, Edward J. Tanner, Jian‐Jun Wei, Yanrong Ji, Junjie Li, Yuying Tan, Ramana V. Davuluri, Ji‐Xin Cheng, Daniela Matei

ORCID match bioRxiv (Cold Spring Harbor Laboratory) · 2020 · Found in ORCID, OpenAlex

DOI: 10.1101/2020.05.28.121590

Choose for “Frizzled-7 Identifies Platinum Tolerant Ovarian Cancer Cells Susceptible to Ferroptosis”

FTO-Dependent N6-Methyladenosine Modifications Inhibit Ovarian Cancer Stem Cell Self-Renewal by Blocking cAMP Signaling

Hao Huang, Yinu Wang, Manoj Kandpal, Guangyuan Zhao, Horacio Cárdenas, Yanrong Ji, Anusha Chaparala, Edward J. Tanner, Jianjun Chen, Ramana V. Davuluri, Daniela Matei

ORCID match Cancer research · 2020 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1158/0008-5472.can-19-4044

Choose for “FTO-Dependent N6-Methyladenosine Modifications Inhibit Ovarian Cancer Stem Cell Self-Renewal by Blocking cAMP Signaling”

A Founding Locus within the RET Proto-Oncogene May Account for a Large Proportion of Apparently Sporadic Hirschsprung Disease and a Subset of Cases of Sporadic Medullary Thyroid Carcinoma

Nita Williams, Guillermo Antiñolo, Manuel López-Alonso, Fred A. Wright, Raquel Fernandez, Charis Eng, Salud Borrego, Ramana V. Davuluri

ORCID match UNC Libraries · 2020 · Found in ORCID, OpenAlex

DOI: 10.17615/rg45-2d02

Choose for “A Founding Locus within the RET Proto-Oncogene May Account for a Large Proportion of Apparently Sporadic Hirschsprung Disease and a Subset of Cases of Sporadic Medullary Thyroid Carcinoma”

Transcriptional consequences of impaired immune cell responses induced by cystic fibrosis plasma characterized via dual RNA sequencing

Justin E. Ideozu, Vittobai Rashika Rangaraj, Hiam Abdala‐Valencia, Xi Zhang, Manoj Kandpal, Marc A. Sala, Ramana V. Davuluri, Hara Levy

ORCID match BMC medical genomics · 2019 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1186/s12920-019-0529-0

Choose for “Transcriptional consequences of impaired immune cell responses induced by cystic fibrosis plasma characterized via dual RNA sequencing”

Multivariate Analysis of Preoperative Magnetic Resonance Imaging Reveals Transcriptomic Classification of de novo Glioblastoma Patients.

Saima Rathore, Hamed Akbari, Spyridon Bakas, Jared Pisapia, Gaurav Shukla, Jeffrey D. Rudie, Xiao Da, Ramana V. Davuluri, Nadia Dahmane, Donald M. O’Rourke, Christos Davatzikos

ORCID match Frontiers in computational neuroscience · 2019 · Found in ORCID, OpenAlex, PubMed

DOI: 10.3389/fncom.2019.00081

Choose for “Multivariate Analysis of Preoperative Magnetic Resonance Imaging Reveals Transcriptomic Classification of de novo Glioblastoma Patients.”

Immune landscapes associated with different glioblastoma molecular subtypes

Maria Martinez‐Lage, Timothy M. Lynch, Yingtao Bi, Carolina Cocito, Gregory P. Way, Sharmistha Pal, Josephine Haller, Rachel Yan, Amy Ziober, Aivi T. Nguyen, Manoj Kandpal, Donald M. O’Rourke, Jeffrey P. Greenfield, Casey S. Greene, Ramana V. Davuluri, Nadia Dahmane

ORCID match Acta neuropathologica communications · 2019 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1186/s40478-019-0803-6

Choose for “Immune landscapes associated with different glioblastoma molecular subtypes”

IDH3α regulates one-carbon metabolism in glioblastoma

Jasmine May, Fotini M. Kouri, Lisa Hurley, Juan Liu, Serena Tommasini-Ghelfi, Yanrong Ji, Peng Gao, Andrea E. Calvert, Andrew Lee, Navdeep S. Chandel, Ramana V. Davuluri, Craig Horbinski, Jason W. Locasale, Alexander H. Stegh

ORCID match Science advances · 2019 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1126/sciadv.aat0456

Choose for “IDH3α regulates one-carbon metabolism in glioblastoma”

Radiomic MRI signature reveals three distinct subtypes of glioblastoma with different clinical and molecular characteristics, offering prognostic value beyond IDH1

Saima Rathore, Hamed Akbari, Martin Rozycki, Kalil G. Abdullah, MacLean P. Nasrallah, Zev A. Binder, Ramana V. Davuluri, Robert A. Lustig, Nadia Dahmane, Michel Bilello, Donald M. O’Rourke, Christos Davatzikos

ORCID match Scientific reports · 2018 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1038/s41598-018-22739-2

Choose for “Radiomic MRI signature reveals three distinct subtypes of glioblastoma with different clinical and molecular characteristics, offering prognostic value beyond IDH1”

Publisher Correction: Transcribed ultraconserved region 339 promotes carcinogenesis by modulating tumor suppressor microRNAs.

Ivan Vannini, Petra M. Wise, Kishore B. Challagundla, Meropi Plousiou, Mirco Raffini, Erika Bandini, Francesca Fanini, Giorgia Paliaga, Melissa Crawford, Manuela Ferracin, Cristina Ivan, Linda Fabris, Ramana V. Davuluri, Zhiyi Guo, María Angélica Cortez, Xinna Zhang, Lu Chen, Shuxing Zhang, Cecilia Fernandez-Cymering, Leng Han, Silvia Carloni, Samanta Salvi, Hui Ling, Mariam Murtadha, Paolo Neviani, Barbara J. Gitlitz, Ite A. Laird‐Offringa, Patrick Nana‐Sinkam, Massimo Negrini, Han Liang, Dino Amadori, Amelia Cimmino, George A. Călin, Muller Fabbri

ORCID match Nature communications · 2018 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1038/s41467-017-02485-1

Choose for “Publisher Correction: Transcribed ultraconserved region 339 promotes carcinogenesis by modulating tumor suppressor microRNAs.”

Metastatic cancers promote cachexia through ZIP14 upregulation in skeletal muscle.

Gang Wang, Anup Biswas, Wanchao Ma, Manoj Kandpal, Courtney Coker, Paul M. Grandgenett, Michael A. Hollingsworth, Rinku Jain, Kurenai Tanji, Sara Lόpez-Pintado, Alain Borczuk, Doreen Hebert, Supak Jenkitkasemwong, Shintaro Hojyo, Ramana V. Davuluri, Mitchell D. Knutson, Toshiyuki Fukada, Swarnali Acharyya

ORCID match Nature medicine · 2018 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1038/s41591-018-0054-2

Choose for “Metastatic cancers promote cachexia through ZIP14 upregulation in skeletal muscle.”

Identification of prognostic molecular subtypes of ovarian serous cystadenocarcinoma by isoform-level gene expression analysis.

ORCID match CLINICAL CANCER RESEARCH · 2018 · Found in ORCID

Choose for “Identification of prognostic molecular subtypes of ovarian serous cystadenocarcinoma by isoform-level gene expression analysis.”

Characterization of brain tumor initiating cells isolated from an animal model of CNS primitive neuroectodermal tumors.

Sergey Malchenko, Simone Treiger Sredni, Jerusha Boyineni, Yingtao Bi, Naira V. Margaryan, Maheedhara R. Guda, Yulia Kostenko, Tadanori Tomita, Ramana V. Davuluri, Kiran Kumar Velpula, Mary J.C. Hendrix, Marcelo B. Soares

ORCID match Oncotarget · 2018 · Found in ORCID, OpenAlex, PubMed

DOI: 10.18632/oncotarget.24460

Choose for “Characterization of brain tumor initiating cells isolated from an animal model of CNS primitive neuroectodermal tumors.”

Transcribed ultraconserved region 339 promotes carcinogenesis by modulating tumor suppressor microRNAs.

Ivan Vannini, Petra M. Wise, Kishore B. Challagundla, Meropi Plousiou, Mirco Raffini, Erika Bandini, Francesca Fanini, Giorgia Paliaga, Melissa Crawford, Manuela Ferracin, Cristina Ivan, Linda Fabris, Ramana V. Davuluri, Zhiyi Guo, María Angélica Cortez, Xinna Zhang, Lu Chen, Shuxing Zhang, Cecilia Fernandez-Cymering, Leng Han, Silvia Carloni, Samanta Salvi, Hui Ling, Mariam Murtadha, Paolo Neviani, Barbara J. Gitlitz, Ite A. Laird‐Offringa, Patrick Nana‐Sinkam, Massimo Negrini, Han Liang, Dino Amadori, Amelia Cimmino, George A. Călin, Muller Fabbri

ORCID match Nature communications · 2017 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1038/s41467-017-01562-9

Choose for “Transcribed ultraconserved region 339 promotes carcinogenesis by modulating tumor suppressor microRNAs.”

TMOD-11. A NOVEL ANIMAL MODEL OF MEDULLOBLASTOMA METASTASIS

Chaomei Xiang, Valérie Baubet, Yingtao Bi, Logan Zhang, Sharmistha Pal, Donald M. O’Rourke, Maria Martinez‐Lage, Ramana V. Davuluri, Nadia Dahmane

ORCID match Neuro-Oncology · 2017 · Found in ORCID, OpenAlex

DOI: 10.1093/neuonc/nox083.210

Choose for “TMOD-11. A NOVEL ANIMAL MODEL OF MEDULLOBLASTOMA METASTASIS”

Stabilization of HIF-1α and HIF-2α, up-regulation of MYCC and accumulation of stabilized p53 constitute hallmarks of CNS-PNET animal model

Sergey Malchenko, Simone Treiger Sredni, Yingtao Bi, Naira V. Margaryan, Jerusha Boyineni, Indra Mohanam, Tadanori Tomita, Ramana V. Davuluri, Marcelo B. Soares

ORCID match PloS one · 2017 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1371/journal.pone.0173106

Choose for “Stabilization of HIF-1α and HIF-2α, up-regulation of MYCC and accumulation of stabilized p53 constitute hallmarks of CNS-PNET animal model”

Orthogonal ubiquitin transfer identifies ubiquitination substrates under differential control by the two ubiquitin activating enzymes.

Xianpeng Liu, Bo Zhao, Limin Sun, Karan Bhuripanyo, Yiyang Wang, Yingtao Bi, Ramana V. Davuluri, Duc M. Duong, Dhaval Nanavati, Jun Yin, Hiroaki Kiyokawa

ORCID match Nature communications · 2017 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1038/ncomms14286

Choose for “Orthogonal ubiquitin transfer identifies ubiquitination substrates under differential control by the two ubiquitin activating enzymes.”

Cancer-Associated IDH1 Promotes Growth and Resistance to Targeted Therapies in the Absence of Mutation

Andrea E. Calvert, Alexandra Chalastanis, Yongfei Wu, Lisa Hurley, Fotini M. Kouri, Yingtao Bi, Maureen Kachman, Jasmine May, Elizabeth T. Bartom, Youjia Hua, Rama K. Mishra, Gary E. Schiltz, Oleksii Dubrovskyi, Andrew P. Mazar, Marcus E. Peter, Hongwu Zheng, C. David James, Charles Burant, Navdeep S. Chandel, Ramana V. Davuluri, Craig Horbinski, Alexander H. Stegh

ORCID match Cell reports · 2017 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1016/j.celrep.2017.05.014

Choose for “Cancer-Associated IDH1 Promotes Growth and Resistance to Targeted Therapies in the Absence of Mutation”

A NOVEL ANIMAL MODEL OF MEDULLOBLASTOMA METASTASIS

ORCID match NEURO-ONCOLOGY · 2017 · Found in ORCID

Choose for “A NOVEL ANIMAL MODEL OF MEDULLOBLASTOMA METASTASIS”

MNK Inhibition Disrupts Mesenchymal Glioma Stem Cells and Prolongs Survival in a Mouse Model of Glioblastoma

Jonathan B. Bell, Frank Eckerdt, Kristen Alley, Lisa P. Magnusson, Hridi Hussain, Yingtao Bi, Ahmet Arslan, Jessica Clymer, Angel A. Alvarez, Stewart Goldman, Shi‐Yuan Cheng, Ichiro Nakano, Craig Horbinski, Ramana V. Davuluri, C. David James, Leonidas C. Platanias

ORCID match Molecular cancer research : MCR · 2016 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1158/1541-7786.mcr-16-0172

Choose for “MNK Inhibition Disrupts Mesenchymal Glioma Stem Cells and Prolongs Survival in a Mouse Model of Glioblastoma”

Differential Innate and Adaptive Immune Infiltration Across Glioblastoma Subtypes

ORCID match JOURNAL OF NEUROPATHOLOGY AND EXPERIMENTAL NEUROLOGY · 2016 · Found in ORCID

Choose for “Differential Innate and Adaptive Immune Infiltration Across Glioblastoma Subtypes”

Combining anti-miR-155 with chemotherapy for the treatment of lung cancers.

Katrien Van Roosbroeck, Francesca Fanini, Tetsuro Setoyama, Cristina Ivan, Cristian Rodriguez‐Aguayo, Enrique Fuentes‐Mattei, Lianchun Xiao, Ivan Vannini, Roxana S. Redis, Lucilla D’Abundo, Xinna Zhang, Milena S. Nicoloso, Simona Rossi, Vianey González-Villasana, Rajesha Rupaimoole, Manuela Ferracin, Fortunato Morabito, Antonino Neri, Peter P. Ruvolo, Vivian Ruvolo, Chad V. Pecot, Dino Amadori, Lynne V. Abruzzo, Steliana Calin, Xuemei Wang, M. James You, Alessandra Ferrajoli, Robert Z. Orlowski, William Plunkett, Tara M. Lichtenberg, Ramana V. Davuluri, Ioana Berindan‐Neagoe, Massimo Negrini, Ignacio I. Wistuba, Hagop M. Kantarjian, Anil K. Sood, Gabriel Lopez‐Berestein, Michael J. Keating, Muller Fabbri, George A. Călin

ORCID match Clinical cancer research : an official journal of the American Association for Cancer Research · 2016 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1158/1078-0432.ccr-16-1025

Choose for “Combining anti-miR-155 with chemotherapy for the treatment of lung cancers.”

Additional file 2: of Gene expression profiling of the human natural killer cell response to Fc receptor activation: unique enhancement in the presence of interleukin-12

Amanda R. Campbell, Kelly Regan, Neela Bhave, Arka Pattanayak, Robin Parihar, Andrew Stiff, Prashant Trikha, Steven D. Scoville, Sandya Liyanarachchi, Sri Vidya Kondadasula, Omkar Lele, Ramana V. Davuluri, Philip Payne, William E. Carson

ORCID match Figshare · 2016 · Found in OpenAlex

DOI: 10.6084/m9.figshare.4351487

Choose for “Additional file 2: of Gene expression profiling of the human natural killer cell response to Fc receptor activation: unique enhancement in the presence of interleukin-12”

Sprouty2 Drives Drug Resistance and Proliferation in Glioblastoma

Alice M. Walsh, Gurpreet S. Kapoor, Janine M. Buonato, Lijoy K. Mathew, Yingtao Bi, Ramana V. Davuluri, Maria Martinez‐Lage, M. Celeste Simon, Donald M. O’Rourke, Matthew J. Lazzara

ORCID match Molecular cancer research : MCR · 2015 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1158/1541-7786.mcr-14-0183-t

Choose for “Sprouty2 Drives Drug Resistance and Proliferation in Glioblastoma”

PDL-1 Expression Differs Between Glioblastoma Subtypes

ORCID match MODERN PATHOLOGY · 2015 · Found in ORCID

Choose for “PDL-1 Expression Differs Between Glioblastoma Subtypes”

PDL-1 Expression Differs Between Glioblastoma Subtypes

ORCID match LABORATORY INVESTIGATION · 2015 · Found in ORCID

Choose for “PDL-1 Expression Differs Between Glioblastoma Subtypes”

Imaging patterns predict patient survival and molecular subtype in glioblastoma via machine learning techniques.

Luke Macyszyn, Hamed Akbari, Jared Pisapia, Xiao Da, Mark Attiah, Vadim Pigrish, Yingtao Bi, Sharmistha Pal, Ramana V. Davuluri, Laura Roccograndi, Nadia Dahmane, Maria Martinez‐Lage, George Biros, Ronald L. Wolf, Michel Bilello, Donald M. O’Rourke, Christos Davatzikos

ORCID match Neuro-oncology · 2015 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1093/neuonc/nov127

Choose for “Imaging patterns predict patient survival and molecular subtype in glioblastoma via machine learning techniques.”

Identification of Reprogrammed Myeloid Cell Transcriptomes in NSCLC.

Anna Durrans, Dingcheng Gao, Ravi Gupta, Kari Fischer, Hyejin Choi, Tina El Rayes, Seongho Ryu, Abu Nasar, Cathy F. Spinelli, Weston Andrews, Olivier Elemento, Daniel J. Nolan, Brendon M. Stiles, Shahin Rafii, Navneet Narula, Ramana V. Davuluri, Nasser K. Altorki, Vivek Mittal

ORCID match PloS one · 2015 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1371/journal.pone.0129123

Choose for “Identification of Reprogrammed Myeloid Cell Transcriptomes in NSCLC.”

Genetic Predisposition to Papillary Thyroid Carcinoma: Involvement of FOXE1, TSHR, and a Novel lincRNA Gene, PTCSC2

Huiling He, Wei Li, Sandya Liyanarachchi, Jarosław Jendrzejewski, Mukund Srinivas, Ramana V. Davuluri, Rebecca Nagy, Albert de la Chapelle

ORCID match The Journal of clinical endocrinology and metabolism · 2015 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1210/jc.2014-2147

Choose for “Genetic Predisposition to Papillary Thyroid Carcinoma: Involvement of FOXE1, TSHR, and a Novel lincRNA Gene, PTCSC2”

Gene expression profiling of the human natural killer cell response to Fc receptor activation: unique enhancement in the presence of interleukin-12.

Amanda R. Campbell, Kelly Regan, Neela Bhave, Arka Pattanayak, Robin Parihar, Andrew Stiff, Prashant Trikha, Steven D. Scoville, Sandya Liyanarachchi, Sri Vidya Kondadasula, Omkar Lele, Ramana V. Davuluri, Philip Payne, William E. Carson

ORCID match BMC medical genomics · 2015 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1186/s12920-015-0142-9

Choose for “Gene expression profiling of the human natural killer cell response to Fc receptor activation: unique enhancement in the presence of interleukin-12.”

Differential macrophage and microglial infiltration across glioblastoma subtypes

ORCID match JOURNAL OF NEUROPATHOLOGY AND EXPERIMENTAL NEUROLOGY · 2015 · Found in ORCID

Choose for “Differential macrophage and microglial infiltration across glioblastoma subtypes”

Correction for Patro et al., Shift in Monocyte Apoptosis with Increasing Viral Load and Change in Apoptosis-Related ISG/Bcl2 Family Gene Expression in Chronically HIV-1-Infected Subjects

Sean C. Patro, Sharmistha Pal, Yingtao Bi, Kenneth Lynn, Karam Mounzer, Jay R. Kostman, Ramana V. Davuluri, Luis J. Montaner

ORCID match Journal of virology · 2015 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1128/jvi.00735-15

Choose for “Correction for Patro et al., Shift in Monocyte Apoptosis with Increasing Viral Load and Change in Apoptosis-Related ISG/Bcl2 Family Gene Expression in Chronically HIV-1-Infected Subjects”

Additional file 3: of Gene expression profiling of the human natural killer cell response to Fc receptor activation: unique enhancement in the presence of interleukin-12

Amanda R. Campbell, Kelly Regan, Neela Bhave, Arka Pattanayak, Robin Parihar, Andrew Stiff, Prashant Trikha, Steven D. Scoville, Sandya Liyanarachchi, Sri Vidya Kondadasula, Omkar Lele, Ramana V. Davuluri, Philip Payne, William E. Carson

ORCID match Figshare · 2015 · Found in ORCID, OpenAlex

DOI: 10.6084/m9.figshare.c.3607355_d4

Choose for “Additional file 3: of Gene expression profiling of the human natural killer cell response to Fc receptor activation: unique enhancement in the presence of interleukin-12”

Abstract PR05: p120 catenin mediated epithelial-to-mesenchymal plasticity determines the metastatic potential of pancreatic ductal adenocarcinoma

Maximilian Reichert, Basil Bakir, Christopher Hahn, Gregory P. Botta, Andrew D. Rhim, Robert H. Vonderheide, Albert B. Reynolds, Yingtao Bi, Ramana V. Davuluri, Burcu Saka, Volkan Adsay, Anil K. Rustgi

ORCID match Cancer Research · 2015 · Found in ORCID, OpenAlex

DOI: 10.1158/1538-7445.panca2014-pr05

Choose for “Abstract PR05: p120 catenin mediated epithelial-to-mesenchymal plasticity determines the metastatic potential of pancreatic ductal adenocarcinoma”

Subtelomeric CTCF and cohesin binding site organization using improved subtelomere assemblies and a novel annotation pipeline

Nicholas Stong, Zhong Deng, Ravi Gupta, Sufen Hu, Shiela Paul, Amber K. Weiner, Evan E. Eichler, Tina Graves, Catrina C. Fronick, Laura Courtney, Richard K. Wilson, Paul M. Lieberman, Ramana V. Davuluri, Harold Riethman

ORCID match Genome research · 2014 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1101/gr.166983.113

Choose for “Subtelomeric CTCF and cohesin binding site organization using improved subtelomere assemblies and a novel annotation pipeline”

Shift in Monocyte Apoptosis with Increasing Viral Load and Change in Apoptosis-Related ISG/Bcl2 Family Gene Expression in Chronically HIV-1-Infected Subjects

Sean C. Patro, Sharmistha Pal, Yingtao Bi, Kenneth Lynn, Karam Mounzer, Jay R. Kostman, Ramana V. Davuluri, Luis J. Montaner

ORCID match Journal of virology · 2014 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1128/jvi.02382-14

Choose for “Shift in Monocyte Apoptosis with Increasing Viral Load and Change in Apoptosis-Related ISG/Bcl2 Family Gene Expression in Chronically HIV-1-Infected Subjects”

ICCABS - Comparison of data discretization methods for cross platform transfer of gene-expression based tumor subtyping classifier

Segun Jung, Yingtao Bi, Ramana V. Davuluri

ORCID match 2014 IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) · 2014 · Found in ORCID, OpenAlex

DOI: 10.1109/iccabs.2014.6863918

Choose for “ICCABS - Comparison of data discretization methods for cross platform transfer of gene-expression based tumor subtyping classifier”

Erratum: CTCF binding site sequence differences are associated with unique regulatory and functional trends during embryonic stem cell differentiation (Nucleic Acids Research (2014) 42 (774-789) DOI:10.1093/nar/gkt910)

Robert N. Plasschaert, Sébastien Vigneau, Italo Tempera, Ravi Gupta, Jasna Maksimoska, Logan J. Everett, Ramana V. Davuluri, Ronen Marmorstein, Paul M. Lieberman, David Schultz, Sridhar Hannenhalli, Marisa S. Bartolomei

ORCID match Nucleic Acids Research · 2014 · Found in ORCID, OpenAlex

DOI: 10.1093/nar/gku470

Choose for “Erratum: CTCF binding site sequence differences are associated with unique regulatory and functional trends during embryonic stem cell differentiation (Nucleic Acids Research (2014) 42 (774-789) DOI:10.1093/nar/gkt910)”

Comparison of Data Discretization Methods for Cross Platform Transfer of Gene-expression based Tumor Subtyping Classifier

ORCID match 2014 IEEE 4TH INTERNATIONAL CONFERENCE ON COMPUTATIONAL ADVANCES IN BIO AND MEDICAL SCIENCES (ICCABS) · 2014 · Found in ORCID

Choose for “Comparison of Data Discretization Methods for Cross Platform Transfer of Gene-expression based Tumor Subtyping Classifier”

miR-218 opposes a critical RTK-HIF pathway in mesenchymal glioblastoma

Lijoy K. Mathew, Nicolas Skuli, Vera Mucaj, Samuel S. Lee, Pascal O. Zinn, Pratheesh Sathyan, Hongxia Z. Imtiyaz, Zhongfa Zhang, Ramana V. Davuluri, Shilpa Rao, Sriram Venneti, Priti Lal, Justin D. Lathia, Jeremy N. Rich, Brian Keith, Andy J. Minn, M. Celeste Simon

ORCID match Proceedings of the National Academy of Sciences of the United States of America · 2013 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1073/pnas.1314341111

Choose for “miR-218 opposes a critical RTK-HIF pathway in mesenchymal glioblastoma”

HINCUTs in cancer: hypoxia-induced noncoding ultraconserved transcripts

Jana Ferdin, Naohiro Nishida, Xue Wu, Milena S. Nicoloso, Maitri Shah, Cecilia Devlin, Hui Ling, Masayoshi Shimizu, Krishan Kumar, María Angélica Cortez, Manuela Ferracin, Y. Bi, Da Yang, Bogdan Czerniak, W. Zhang, Thomas D. Schmittgen, Mathijs Voorhoeve, Mauricio J. Reginato, Massimo Negrini, Ramana V. Davuluri, Tanja Kunej, Mircea Ivan, George A. Călin

ORCID match Cell death and differentiation · 2013 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1038/cdd.2013.119

Choose for “HINCUTs in cancer: hypoxia-induced noncoding ultraconserved transcripts”

Global Identification of EVI1 Target Genes in Acute Myeloid Leukemia.

Carolyn Glass, Charles A. Wuertzer, Xiaohui Cui, Yingtao Bi, Ramana V. Davuluri, Ying-Yi Xiao, Michael P. Wilson, Kristina M. Owens, Yi Zhang, Archibald S. Perkins

ORCID match PloS one · 2013 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1371/journal.pone.0067134

Choose for “Global Identification of EVI1 Target Genes in Acute Myeloid Leukemia.”

CTCF binding site sequence differences are associated with unique regulatory and functional trends during embryonic stem cell differentiation

Robert N. Plasschaert, Sébastien Vigneau, Italo Tempera, Ravi Gupta, Jasna Maksimoska, Logan J. Everett, Ramana V. Davuluri, R. Mamorstein, Paul M. Lieberman, D. Schultz, Sridhar Hannenhalli, Marisa S. Bartolomei

ORCID match Nucleic acids research · 2013 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1093/nar/gkt910

Choose for “CTCF binding site sequence differences are associated with unique regulatory and functional trends during embryonic stem cell differentiation”

Bioinformatics Approaches to the Study of MicroRNAs

Ravi Gupta, Ramana V. Davuluri

ORCID match Non-coding RNAs and Cancer · 2013 · Found in ORCID, OpenAlex

DOI: 10.1007/978-1-4614-8444-8_9

Choose for “Bioinformatics Approaches to the Study of MicroRNAs”

Abstract 4972: Analysis of the reprogrammed bone marrow-derived stroma in lung cancer unravels potential targets for prognosis and therapy.

Anna Durrans, Dingcheng Gao, Ravi Gupta, Seongho Ryu, Navneet Narula, Kari Fischer, Hyejin Choi, Brendon M. Stiles, Abu Nasar, Ramana V. Davuluri, Nasser K. Altorki, Vivek Mittal

ORCID match Cancer Research · 2013 · Found in ORCID, OpenAlex

DOI: 10.1158/1538-7445.am2013-4972

Choose for “Abstract 4972: Analysis of the reprogrammed bone marrow-derived stroma in lung cancer unravels potential targets for prognosis and therapy.”

<i>CCAT2</i>, a novel noncoding RNA mapping to 8q24, underlies metastatic progression and chromosomal instability in colon cancer

Hui Ling, Riccardo Spizzo, Yaser Atlasi, Milena S. Nicoloso, Masayoshi Shimizu, Roxana S. Redis, Naohiro Nishida, Roberta Gafà, Jian H. Song, Zhiyi Guo, Cristina Ivan, Elisa Barbarotto, Ingrid de Vries, Xinna Zhang, Manuela Ferracin, Mike Churchman, Janneke F. van Galen, Berna Beverloo, Maryam Shariati, Franziska Haderk, Marcos R. Estecio, Guillermo Garcia‐Manero, Gijs A. Patijn, D. C. Gotley, Vikas Bhardwaj, Imad Shureiqi, Subrata Sen, Asha S. Multani, James Welsh, Ken Yamamoto, Itsuki Taniguchi, Min‐Ae Song, Steven Gallinger, Graham Casey, Stephen N. Thibodeau, Loı̈c Le Marchand, Maarit Tiirikainen, Sendurai A. Mani, Wei Zhang, Ramana V. Davuluri, Koshi Mimori, Masaki Mori, Anieta M. Sieuwerts, John W.M. Martens, Ian Tomlinson, Massimo Negrini, Ioana Berindan‐Neagoe, John A. Foekens, Stanley R. Hamilton, Giovanni Lanza, Scott Kopetz, Riccardo Fodde, George A. Călin

ORCID match GENOME RESEARCH · 2013 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1101/gr.152942.112

Choose for “<i>CCAT2</i>, a novel noncoding RNA mapping to 8q24, underlies metastatic progression and chromosomal instability in colon cancer”

The polymorphism rs944289 predisposes to papillary thyroid carcinoma through a large intergenic noncoding RNA gene of tumor suppressor type

Jarosław Jendrzejewski, Huiling He, Hanna S. Radomska, Wei Li, Jerneja Tomšič, Sandya Liyanarachchi, Ramana V. Davuluri, Rebecca Nagy, Albert de la Chapelle

ORCID match Proceedings of the National Academy of Sciences of the United States of America · 2012 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1073/pnas.1205654109

Choose for “The polymorphism rs944289 predisposes to papillary thyroid carcinoma through a large intergenic noncoding RNA gene of tumor suppressor type”

Sequencing and analysis of a South Asian-Indian personal genome

Ravi Gupta, Aakrosh Ratan, Changanamkandath Rajesh, Rong Chen, Hie Lim Kim, Richard Burhans, Webb Miller, Sam Santhosh, Ramana V. Davuluri, Atul J. Butte, Stephan C. Schuster, Somasekar Seshagiri, George Thomas

ORCID match BMC genomics · 2012 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1186/1471-2164-13-440

Choose for “Sequencing and analysis of a South Asian-Indian personal genome”

REFINEMENT OF GLIOBLASTOMA MOLECULAR SUBTYPES BY ISOFORM LEVEL EXPRESSION ANALYSIS

ORCID match NEURO-ONCOLOGY · 2012 · Found in ORCID

Choose for “REFINEMENT OF GLIOBLASTOMA MOLECULAR SUBTYPES BY ISOFORM LEVEL EXPRESSION ANALYSIS”

LAB-OMICS AND PROGNOSTIC MARKERS

Randy L. Jensen, Shaji Abraham, Nan Hu, Randy L. Jensen, Jean‐Louis Boulay, Severina Leu, Sander B. Frank, Erik Vassella, István Vajtai, SJ Felten, Elisabeth Taylor, Matthias Schulz, Gregor Hütter, Martin Sailer, Juergen Hench, Luigi Mariani, Hinke F. van Thuijl, Ilari Scheinin, Dirk F. van Essen, J. J. Heimans, Pieter Wesseling, Bauke Ylstra, Jaap C. Reijneveld, Alexandra Borges, P. L. Larrubia, J. M. Bravo Marques, Sebastián Cerdán, Priscilla K. Brastianos, Peleg Horowitz, Sandro Santagata, Robert T. Jones, Aaron McKenna, Gaddy Getz, Keith L. Ligon, Emanuele Palescandolo, Paul Van Hummelen, Anat Stemmer‐Rachamimov, David N. Louis, William C. Hahn, Ian F. Dunn, Rameen Beroukhim, X. Guan, Jaime Vengoechea, Sheng Zheng, Angela Sloan, Y. Chen, Daniel J. Brat, Brian Patrick O’Neill, Mark L. Cohen, Ken Aldape, Steven S. Rosenfeld, Houtan Noushmehr, Roeland Verhaak, Jill S. Barnholtz‐Sloan, El Mustapha Bahassi, Y.-Q. Li, Emily W. Cross, W. Li, Jan Vijg, Christopher McPherson, Ronald E. Warnick, P. J. Stambrook, Olivier Rixe, Lorea Manterola, Sonia Tejada-Solís, Ricardo Díez-Valle, Marcos González, Patricia Jáuregui, Nicolàs Samprón, Cristina Barrena, I. Ruiz, Javier Gállego, J.‐Y. Delattre, A. L. de Munain, M. M. Mlonso, Kenji Saito, Akitake Mukasa, Genta Nagae, Koki Aihara, Satoshi Takayanagi, Hiroyuki Aburatani, Norihiko Saito, Xi Kong, Bidong Fu, Suming Du, Anton N. Hasso, Mark E. Linskey, Daniela A. Bota, C. Li, Y.-S. Chen, Z.-p. Chen, C. H. Kim, Jae‐Ho Cheong, J. M. Kim, N. P. Yelon, Edgar Jacoby, Zvi R. Cohen, Joji Ishida, Kazuhiko Kurozumi, Tomotsugu Ichikawa

ORCID match Neuro-Oncology · 2012 · Found in ORCID, OpenAlex

DOI: 10.1093/neuonc/nos231

Choose for “LAB-OMICS AND PROGNOSTIC MARKERS”

LAB-CELL BIOLOGY AND SIGNALING

ORCID match Neuro-Oncology · 2012 · Found in ORCID

DOI: 10.1093/neuonc/nos220

Choose for “LAB-CELL BIOLOGY AND SIGNALING”

Identification of Host-Chromosome Binding Sites and Candidate Gene Targets for Kaposi's Sarcoma-Associated Herpesvirus LANA

Fang Lü, Kevin Tsai, Horng-Shen Chen, Priyankara Wikramasinghe, Ramana V. Davuluri, Louise C. Showe, John F. Domsic, Ronen Marmorstein, Paul M. Lieberman

ORCID match Journal of virology · 2012 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1128/jvi.07216-11

Choose for “Identification of Host-Chromosome Binding Sites and Candidate Gene Targets for Kaposi's Sarcoma-Associated Herpesvirus LANA”

Alternative transcription and alternative splicing in cancer.

Sharmistha Pal, Ravi Gupta, Ramana V. Davuluri

ORCID match Pharmacology & therapeutics · 2012 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1016/j.pharmthera.2012.08.005

Choose for “Alternative transcription and alternative splicing in cancer.”

ANALYSIS OF THE EPTHELIAL GROWTH FACTOR RECEPTOR VIII-INDUCED TRANSCRIPTOME IN RAT GLIOMAS AND HUMAN GLIOBLASTOMAS

ORCID match NEURO-ONCOLOGY · 2012 · Found in ORCID

Choose for “ANALYSIS OF THE EPTHELIAL GROWTH FACTOR RECEPTOR VIII-INDUCED TRANSCRIPTOME IN RAT GLIOMAS AND HUMAN GLIOBLASTOMAS”

A role for CTCF and cohesin in subtelomere chromatin organization, TERRA transcription, and telomere end protection.

Zhong Deng, Zhuo Wang, Nick Stong, Robert N. Plasschaert, Aliah Moczan, Horng-Shen Chen, Sufeng Hu, Priyankara Wikramasinghe, Ramana V. Davuluri, Marisa S. Bartolomei, Harold Riethman, Paul M. Lieberman

ORCID match The EMBO journal · 2012 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1038/emboj.2012.266

Choose for “A role for CTCF and cohesin in subtelomere chromatin organization, TERRA transcription, and telomere end protection.”

RP58/ZNF238 directly modulates proneurogenic gene levels and is required for neuronal differentiation and brain expansion

Chaomei Xiang, Valérie Baubet, Sharmistha Pal, Laura Holderbaum, Valérie M. Tatard, Ping Jiang, Ramana V. Davuluri, Nadia Dahmane

ORCID match Cell death and differentiation · 2011 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1038/cdd.2011.144

Choose for “RP58/ZNF238 directly modulates proneurogenic gene levels and is required for neuronal differentiation and brain expansion”

P1-03-09: Significance of FAP, SMA and CD31 Expression in the Stroma of Breast Cancer.

Julia Tchou, Celine Satija, Panpan Zhang, Yue Bi, Ramana V. Davuluri, H Chen, R. Sonali Majumdar, Carolyn Mies, Meenhard Herlyn, Ellen Puré

ORCID match Cancer Research · 2011 · Found in ORCID, OpenAlex

DOI: 10.1158/0008-5472.sabcs11-p1-03-09

Choose for “P1-03-09: Significance of FAP, SMA and CD31 Expression in the Stroma of Breast Cancer.”

DECREASED MIR-218 EXPRESSION PROMOTES TUMOR CELL SURVIVAL PATHWAYS IN GLIOBLASTOMAS

ORCID match NEURO-ONCOLOGY · 2011 · Found in ORCID

Choose for “DECREASED MIR-218 EXPRESSION PROMOTES TUMOR CELL SURVIVAL PATHWAYS IN GLIOBLASTOMAS”

CELL BIOLOGY AND SIGNALING

ORCID match Neuro-Oncology · 2011 · Found in ORCID

DOI: 10.1093/neuonc/nor148

Choose for “CELL BIOLOGY AND SIGNALING”

Association of a microRNA/TP53 Feedback Circuitry With Pathogenesis and Outcome of B-cell Chronic Lymphocytic Leukemia

Muller Fabbri, Arianna Bottoni, Masayoshi Shimizu, Riccardo Spizzo, Milena S Nicoloso, Simona Rossi, Elisa Barbarotto, Amelia Cimmino, Brett Adair, Sylwia E Wojcik, Nicola Valeri, Federica Calore, Deepa Sampath, Francesca Fanini, Ivan Vannini, Gerardo Musuraca, Marie Dell'Aquila, Hansjuerg Alder, Ramana V Davuluri, Laura Z Rassenti, Massimo Negrini, Tatsuya Nakamura, Dino Amadori, Neil E Kay, Kanti R Rai, Michael J Keating, Thomas J Kipps, George A Calin, Carlo M Croce

ORCID match JAMA · 2011 · Found in ORCID, PubMed

DOI: 10.1001/jama.2010.1919

Choose for “Association of a microRNA/TP53 Feedback Circuitry With Pathogenesis and Outcome of B-cell Chronic Lymphocytic Leukemia”

Alternative transcription exceeds alternative splicing in generating the transcriptome diversity of cerebellar development

Sharmistha Pal, Ravi Gupta, Hyunsoo Kim, Priyankara Wickramasinghe, Valérie Baubet, Louise C. Showe, Nadia Dahmane, Ramana V. Davuluri

ORCID match Genome research · 2011 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1101/gr.120535.111

Choose for “Alternative transcription exceeds alternative splicing in generating the transcriptome diversity of cerebellar development”

The H3K27me3 Demethylase dUTX Is a Suppressor of Notch- and Rb-Dependent Tumors in Drosophila

Hans‐Martin Herz, Laurence D. Madden, Zhihong Chen, Clare Bolduc, Eugene Buff, Ravi Gupta, Ramana V. Davuluri, Ali Shilatifard, Iswar K. Hariharan, Andreas Bergmann

ORCID match Molecular and cellular biology · 2010 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1128/mcb.01633-09

Choose for “The H3K27me3 Demethylase dUTX Is a Suppressor of Notch- and Rb-Dependent Tumors in Drosophila”

Single-nucleotide polymorphisms inside microRNA target sites influence tumor susceptibility.

Milena S. Nicoloso, Hao Sun, Riccardo Spizzo, Hyunsoo Kim, Priyankara Wickramasinghe, Masayoshi Shimizu, Sylwia E. Wojcik, Jana Ferdin, Tanja Kunej, Lianchun Xiao, Siranoush Manoukian, Giorgio Secreto, Fernando Ravagnani, Xuemei Wang, Paolo Radice, Carlo M. Croce, Ramana V. Davuluri, George A. Calin

ORCID match Cancer research · 2010 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1158/0008-5472.can-09-3541

Choose for “Single-nucleotide polymorphisms inside microRNA target sites influence tumor susceptibility.”

Promoter hypermethylation of FBXO32, a novel TGF-β/SMAD4 target gene and tumor suppressor, is associated with poor prognosis in human ovarian cancer

Jian‐Liang Chou, Her‐Young Su, Lin‐Yu Chen, Yu‐Ping Liao, Corinna Hartman-Frey, Yi-Hui Lai, Hui‐Wen Yang, Daniel E. Deatherage, Chieh‐Ti Kuo, Yi‐Wen Huang, Pearlly S. Yan, Shu‐Huei Hsiao, Chien-Kuo Tai, Huey‐Jen Lin, Ramana V. Davuluri, Tai‐Kuang Chao, Kenneth P. Nephew, Tim H-M. Huang, Hung-Cheng Lai, Michael WY Chan

ORCID match Laboratory investigation; a journal of technical methods and pathology · 2010 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1038/labinvest.2009.138

Choose for “Promoter hypermethylation of FBXO32, a novel TGF-β/SMAD4 target gene and tumor suppressor, is associated with poor prognosis in human ovarian cancer”

MPromDb update 2010: an integrated resource for annotation and visualization of mammalian gene promoters and ChIP-seq experimental data

Ravi Gupta, Anirban Bhattacharyya, Francisco Agosto-Perez, Priyankara Wickramasinghe, Ramana V. Davuluri

ORCID match Nucleic acids research · 2010 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1093/nar/gkq1171

Choose for “MPromDb update 2010: an integrated resource for annotation and visualization of mammalian gene promoters and ChIP-seq experimental data”

Genome-wide mapping of RNA Pol-II promoter usage in mouse tissues by ChIP-seq

Hao Sun, Jiejun Wu, Priyankara Wickramasinghe, Sharmistha Pal, Ravi Gupta, Anirban Bhattacharyya, Francisco Agosto-Perez, Louise C. Showe, Tim H.‐M. Huang, Ramana V. Davuluri

ORCID match Nucleic acids research · 2010 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1093/nar/gkq775

Choose for “Genome-wide mapping of RNA Pol-II promoter usage in mouse tissues by ChIP-seq”

Biomedical Informatics for Cancer Research: Introduction

Michael F. Ochs, John T. Casagrande, Ramana V. Davuluri

ORCID match Biomedical Informatics for Cancer Research · 2010 · Found in ORCID, OpenAlex

DOI: 10.1007/978-1-4419-5714-6_1

Choose for “Biomedical Informatics for Cancer Research: Introduction”

BCB - Data mining of mRNA-Seq and small RNA-Seq data to find microRNA targets

Hyunsoo Kim, Ramana V. Davuluri

ORCID match Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology · 2010 · Found in ORCID, OpenAlex

DOI: 10.1145/1854776.1854871

Choose for “BCB - Data mining of mRNA-Seq and small RNA-Seq data to find microRNA targets”

Abstract 3072: Promoter hypermethylation of FBXO32, a novel TGF-β/SMAD4 target gene and tumor suppressor, is associated with poor prognosis in human ovarian cancer

Jian‐Liang Chou, Her‐Young Su, Lin‐Yu Chen, Yu‐Ping Liao, Corinna Hartman-Frey, Yi-Hui Lai, Hui‐Wen Yang, Daniel E. Deatherage, Chieh‐Ti Kuo, Yi‐Wen Huang, Pearlly S. Yan, Shu‐Huei Hsiao, Chien-Kuo Tai, Huey‐Jen Lin, Ramana V. Davuluri, Tai‐Kuang Chao, Kenneth P. Nephew, Tim H.‐M. Huang, Hung-Cheng Lai, Michael W.Y. Chan

ORCID match Cancer Research · 2010 · Found in ORCID, OpenAlex

DOI: 10.1158/1538-7445.am10-3072

Choose for “Abstract 3072: Promoter hypermethylation of FBXO32, a novel TGF-β/SMAD4 target gene and tumor suppressor, is associated with poor prognosis in human ovarian cancer”

MicroRNAs, ultraconserved genes and colorectal cancers

Simona Rossi, Scott Kopetz, Ramana V. Davuluri, Stanley R. Hamilton, George A. Calin

ORCID match The international journal of biochemistry & cell biology · 2009 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1016/j.biocel.2009.05.018

Choose for “MicroRNAs, ultraconserved genes and colorectal cancers”

MiR-145 participates with TP53 in a death-promoting regulatory loop and targets estrogen receptor-α in human breast cancer cells

Riccardo Spizzo, Milena S. Nicoloso, Laura Lupini, Yiling Lu, Julie A Fogarty, Simona Rossi, Barbara Zagatti, Muller Fabbri, Angelo Veronese, X Liu, Ramana V. Davuluri, Carlo M. Croce, Gordon B. Mills, Massimo Negrini, George A. Calin

ORCID match Cell death and differentiation · 2009 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1038/cdd.2009.117

Choose for “MiR-145 participates with TP53 in a death-promoting regulatory loop and targets estrogen receptor-α in human breast cancer cells”

Global Gene Expression in Activated CD56<SUP>DIM</SUP>CD16<SUP>+</SUP> Human NK Cells

ORCID match JOURNAL OF IMMUNOTHERAPY · 2009 · Found in ORCID

Choose for “Global Gene Expression in Activated CD56<SUP>DIM</SUP>CD16<SUP>+</SUP> Human NK Cells”

Epigenetic changes during disease progression in a murine model of human chronic lymphocytic leukemia

Shih‐Shih Chen, Aparna Raval, Amy J. Johnson, Erin Hertlein, Te-Hui Liu, Victor X. Jin, Mara H. Sherman, Shujun Liu, David W. Dawson, Katie Williams, Mark C. Lanasa, Sandya Liyanarachchi, Thomas S. Lin, Guido Marcucci, Yuri Pekarsky, Ramana V. Davuluri, Carlo M. Croce, Denis C. Guttridge, Michael A. Teitell, John C. Byrd, Christoph Plass

ORCID match Proceedings of the National Academy of Sciences of the United States of America · 2009 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1073/pnas.0906455106

Choose for “Epigenetic changes during disease progression in a murine model of human chronic lymphocytic leukemia”

An integrative ChIP-chip and gene expression profiling to model SMAD regulatory modules

Huaxia Qin, Michael WY Chan, Sandya Liyanarachchi, Curtis Balch, Dustin Potter, Irene J Souriraj, Alfred S.L. Cheng, Francisco Agosto-Perez, Elena Nikonova, Pearlly S. Yan, Huey‐Jen Lin, Kenneth P. Nephew, Joel H. Saltz, Louise C. Showe, Tim H-M. Huang, Ramana V. Davuluri

ORCID match BMC systems biology · 2009 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1186/1752-0509-3-73

Choose for “An integrative ChIP-chip and gene expression profiling to model SMAD regulatory modules”

In silico prediction of target SNPs affecting miR-mRNA interaction

Hao Sun, Milena S. Nicoloso, Anirban Bhattacharyya, George A. Calin, Ramana V. Davuluri

ORCID match 2008 IEEE International Conference on Bioinformatics and Biomeidcine Workshops · 2008 · Found in ORCID, OpenAlex

DOI: 10.1109/bibmw.2008.4686238

Choose for “In silico prediction of target SNPs affecting miR-mRNA interaction”

DNA hypermethylation and epigenetic silencing of the tumor suppressor gene, SLC5A8, in acute myeloid leukemia with the MLL partial tandem duplication.

Susan P. Whitman, Björn Hackanson, Sandya Liyanarachchi, Shujun Liu, Laura J. Rush, Kati Maharry, Dean Margeson, Ramana V. Davuluri, Jing Wen, T. J. de Witte, Li Yu, Chunhui Liu, Clara D. Bloomfield, Guido Marcucci, Christoph Plass, Michael A. Caligiuri

ORCID match Blood · 2008 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1182/blood-2008-01-128595

Choose for “DNA hypermethylation and epigenetic silencing of the tumor suppressor gene, SLC5A8, in acute myeloid leukemia with the MLL partial tandem duplication.”

An application of a service-oriented system to support array annotation in custom chip design for epigenomic analysis.

Junghee Han, Dustin Potter, Tahsin Kurç, Greg Singer, Pearlly S. Yan, Hao Sun, Shannon Hastings, Stephen Langella, Scott Oster, Ramana V. Davuluri, Tim H-M Huang, Joel H. Saltz

ORCID match PubMed · 2008 · Found in ORCID, OpenAlex, PubMed

Choose for “An application of a service-oriented system to support array annotation in custom chip design for epigenomic analysis.”

An Application of a Service-oriented System to Support ArrayAnnotation in Custom Chip Design for Epigenomic Analysis

Junghee Han, Dustin Potter, Tahsin Kurç, Greg Singer, Pearlly S. Yan, Hao Sun, Shannon Hastings, Stephen Langella, Scott Oster, Ramana V. Davuluri, Tim H.M. Huang, Joel H. Saltz

ORCID match Cancer Informatics · 2008 · Found in ORCID, OpenAlex

DOI: 10.1177/117693510800600005

Choose for “An Application of a Service-oriented System to Support ArrayAnnotation in Custom Chip Design for Epigenomic Analysis”

An Application of a Service-oriented System to Support ArrayAnnotation in Custom Chip Design for Epigenomic Analysis

ORCID match CANCER INFORMATICS · 2008 · Found in ORCID

Choose for “An Application of a Service-oriented System to Support ArrayAnnotation in Custom Chip Design for Epigenomic Analysis”

Aberrant Transforming Growth Factor β1 Signaling and SMAD4 Nuclear Translocation Confer Epigenetic Repression of ADAM19 in Ovarian Cancer

Michael W.Y. Chan, Yi‐Wen Huang, Corinna Hartman-Frey, Chieh‐Ti Kuo, Daniel E. Deatherage, Huaxia Qin, Alfred S.L. Cheng, Pearlly S. Yan, Ramana V. Davuluri, Tim H.M. Huang, Kenneth P. Nephew, Huey‐Jen Lin

ORCID match Neoplasia (New York, N.Y.) · 2008 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1593/neo.08540

Choose for “Aberrant Transforming Growth Factor β1 Signaling and SMAD4 Nuclear Translocation Confer Epigenetic Repression of ADAM19 in Ovarian Cancer”

A microRNA component of the hypoxic response

Ritu Kulshreshtha, Ramana V. Davuluri, George A. Calin, Mircea Ivan

ORCID match Cell death and differentiation · 2008 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1038/sj.cdd.4402310

Choose for “A microRNA component of the hypoxic response”

Regulation of microRNA expression - The hypoxic component

ORCID match CELL CYCLE · 2007 · Found in ORCID

Choose for “Regulation of microRNA expression - The hypoxic component”

Regulation of microRNA Expression The Hypoxic Component

Ritu Kulshreshtha, Manuela Ferracin, Massimo Negrini, George A. Calin, Ramana V. Davuluri, Mircea Ivan

ORCID match Cell cycle (Georgetown, Tex.) · 2007 · Found in ORCID, OpenAlex, PubMed

DOI: 10.4161/cc.6.12.4410

Choose for “Regulation of microRNA Expression The Hypoxic Component”

NF-κB Regulation of YY1 Inhibits Skeletal Myogenesis through Transcriptional Silencing of Myofibrillar Genes

Huating Wang, Erin Hertlein, Nadine Bakkar, Hao Sun, Swarnali Acharyya, Jingxin Wang, Micheal Carathers, Ramana V. Davuluri, Denis C. Guttridge

ORCID match Molecular and cellular biology · 2007 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1128/mcb.02020-06

Choose for “NF-κB Regulation of YY1 Inhibits Skeletal Myogenesis through Transcriptional Silencing of Myofibrillar Genes”

MicroRNA genes are frequently located near mouse cancer susceptibility loci

Cinzia Sevignani, George A. Calin, Stephanie C. Nnadi, Masayoshi Shimizu, Ramana V. Davuluri, Terry Hyslop, Peter Démant, Carlo M. Croce, Linda D. Siracusa

ORCID match Proceedings of the National Academy of Sciences of the United States of America · 2007 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1073/pnas.0702177104

Choose for “MicroRNA genes are frequently located near mouse cancer susceptibility loci”

Identification of a novel noncoding RNA gene, NAMA, that is downregulated in papillary thyroid carcinoma with BRAF mutation and associated with growth arrest.

Heejei Yoon, Huiling He, Rebecca Nagy, Ramana V. Davuluri, Saul Suster, Daniel R. Schoenberg, Natalia S. Pellegata, Albert de la Chapelle

ORCID match International journal of cancer · 2007 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1002/ijc.22701

Choose for “Identification of a novel noncoding RNA gene, NAMA, that is downregulated in papillary thyroid carcinoma with BRAF mutation and associated with growth arrest.”

CpG island methylation in a mouse model of lymphoma is driven by the genetic configuration of tumor cells.

René Opavský, Shu‐Huei Wang, Prashant Trikha, Aparna Raval, Yuan Huang, Yue-Zhong Wu, Blanca Rodríguez, Benjamin J. Keller, Sandya Liyanarachchi, Wei Guo, Ramana V. Davuluri, Michael Weinstein, Dean W. Felsher, Michael C. Ostrowski, Gustavo Leone, Christoph Plass

ORCID match PLoS genetics · 2007 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1371/journal.pgen.0030167

Choose for “CpG island methylation in a mouse model of lymphoma is driven by the genetic configuration of tumor cells.”

Aberrant DNA Methylation of OLIG1, a Novel Prognostic Factor in Non-Small Cell Lung Cancer

Romulo Martin Brena, Quaid Morris, Sandya Liyanarachchi, David Jarjoura, Ramana V. Davuluri, Gregory A. Otterson, David Reisman, Selina Glaros, Laura J. Rush, Christoph Plass

ORCID match PLoS medicine · 2007 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1371/journal.pmed.0040108

Choose for “Aberrant DNA Methylation of OLIG1, a Novel Prognostic Factor in Non-Small Cell Lung Cancer”

A MicroRNA Signature of Hypoxia

Ritu Kulshreshtha, Manuela Ferracin, Sylwia E. Wojcik, Ramiro Garzon, Hansjüerg Alder, Francisco Agosto-Perez, Ramana V. Davuluri, Chang‐Gong Liu, Carlo M. Croce, Massimo Negrini, George A. Calin, Mircea Ivan

ORCID match Molecular and cellular biology · 2007 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1128/mcb.01395-06

Choose for “A MicroRNA Signature of Hypoxia”

Prognostic DNA Methylation Biomarkers in Ovarian Cancer

Susan Wei, Curtis Balch, Henry Paik, Yoo-Sung Kim, Rae Lynn Baldwin, Sandya Liyanarachchi, Lang Li, Zailong Wang, Joseph C. Wan, Ramana V. Davuluri, Beth Y. Karlan, Gillian Gifford, Robert Brown, Sun Kim, Tim H-M. Huang, Kenneth P. Nephew

ORCID match Clinical cancer research : an official journal of the American Association for Cancer Research · 2006 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1158/1078-0432.ccr-05-1551

Choose for “Prognostic DNA Methylation Biomarkers in Ovarian Cancer”

Pro- and Antiinflammatory Cytokine Signaling: Reciprocal Antagonism Regulates Interferon-gamma Production by Human Natural Killer Cells

Jianhua Yu, Wei Min, Brian Becknell, Rossana Trotta, Shujun Liu, Zachary Boyd, Michael Jaung, Bradley W. Blaser, Jin Sun, Don M. Benson, Hsiaoyin Mao, Akihiko Yokohama, Darshna Bhatt, Lei Shen, Ramana V. Davuluri, Michael Weinstein, Guido Marcucci, Michael A. Caligiuri

ORCID match Immunity · 2006 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1016/j.immuni.2006.03.016

Choose for “Pro- and Antiinflammatory Cytokine Signaling: Reciprocal Antagonism Regulates Interferon-gamma Production by Human Natural Killer Cells”

HOXB13 is an estrogen receptor responsive gene preferentially methylated in ER-positive breast cancer

ORCID match CANCER RESEARCH · 2006 · Found in ORCID

Choose for “HOXB13 is an estrogen receptor responsive gene preferentially methylated in ER-positive breast cancer”

Dysregulation of TGFβ/Smad4 signaling and contribution of a CpG island methylator phenotype in ovarian cancer

ORCID match CANCER RESEARCH · 2006 · Found in ORCID

Choose for “Dysregulation of TGFβ/Smad4 signaling and contribution of a CpG island methylator phenotype in ovarian cancer”

Combinatorial analysis of transcription factor partners reveals c-MYC as a positive regulator in estrogen receptor α- mediated gene activation.

ORCID match CANCER RESEARCH · 2006 · Found in ORCID

Choose for “Combinatorial analysis of transcription factor partners reveals c-MYC as a positive regulator in estrogen receptor α- mediated gene activation.”

Combinatorial Analysis of Transcription Factor Partners Reveals Recruitment of c-MYC to Estrogen Receptor-α Responsive Promoters

Alfred S.L. Cheng, Victor X. Jin, Meiyun Fan, Laura T. Smith, Sandya Liyanarachchi, Pearlly S. Yan, Yu-Wei Leu, Michael W.Y. Chan, Christoph Plass, Kenneth P. Nephew, Ramana V. Davuluri, Tim H-M. Huang

ORCID match Molecular cell · 2006 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1016/j.molcel.2005.12.016

Choose for “Combinatorial Analysis of Transcription Factor Partners Reveals Recruitment of c-MYC to Estrogen Receptor-α Responsive Promoters”

A mixture model-based discriminate analysis for identifying ordered transcription factor binding site pairs in gene promoters directly regulated by estrogen receptor-α

Lang Li, Alfred S.L. Cheng, Victor X. Jin, Henry Paik, Meiyun Fan, Xiaoman Li, Wei Zhang, Jason Robarge, Curtis Balch, Ramana V. Davuluri, Sun Kim, Tim H.‐M. Huang, Kenneth P. Nephew

ORCID match Bioinformatics (Oxford, England) · 2006 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1093/bioinformatics/btl329

Choose for “A mixture model-based discriminate analysis for identifying ordered transcription factor binding site pairs in gene promoters directly regulated by estrogen receptor-α”

CpG Island Methylation in a Mouse Model of Lymphoma Is Driven by the Genetic Configuration of Tumor Cells

René Opavský, Shu‐Huei Wang, Prashant Trikha, Aparna Raval, Yuan Huang, Yue-Zhong Wu, Blanca Rodríguez, B Keller, Sandya Liyanarachchi, Wei Guo, Ramana V. Davuluri, Michael I. Weinstein, Dean W. Felsher, Michael C. Ostrowski, Gustavo Leone, Christoph Plass

ORCID match PLoS Genetics · 2005 · Found in ORCID, OpenAlex

DOI: 10.1371/journal.pgen.0030167.eor

Choose for “CpG Island Methylation in a Mouse Model of Lymphoma Is Driven by the Genetic Configuration of Tumor Cells”

Papillary and follicular thyroid carcinomas show distinctly different microarray expression profiles and can be distinguished by a minimum of five genes

Micheala A. Aldred, Ying Huang, Sandya Liyanarachchi, Natalia S. Pellegata, Oliver Gimm, Sissy Jhiang, Ramana V. Davuluri, Albert de la Chapelle, Charis Eng

ORCID match JOURNAL OF CLINICAL ONCOLOGY · 2004 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1200/jco.2004.08.127

Choose for “Papillary and follicular thyroid carcinomas show distinctly different microarray expression profiles and can be distinguished by a minimum of five genes”

PML Is a Direct p53 Target that Modulates p53 Effector Functions

Elisa de Stanchina, Emmanuelle Querido, Masako Narita, Ramana V. Davuluri, Pier Paolo Pandolfi, Gerardo Ferbeyre, Scott W. Lowe

ORCID match Molecular cell · 2004 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1016/s1097-2765(04)00062-0

Choose for “PML Is a Direct p53 Target that Modulates p53 Effector Functions”

OMGProm: a database of orthologous mammalian gene promoters

Saranyan K. Palaniswamy, Victor X. Jin, Hao Sun, Ramana V. Davuluri

ORCID match Bioinformatics (Oxford, England) · 2004 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1093/bioinformatics/bti119

Choose for “OMGProm: a database of orthologous mammalian gene promoters”

Loss of estrogen receptor signaling triggers epigenetic silencing of downstream targets in breast cancer

Yu-Wei Leu, Pearlly S. Yan, Meiyun Fan, Victor X. Jin, Joseph C. Liu, Edward M. Curran, Wade V. Welshons, Susan Wei, Ramana V. Davuluri, Christoph Plass, Kenneth P. Nephew, Tim H-M. Huang

ORCID match Cancer research · 2004 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1158/0008-5472.can-04-2045

Choose for “Loss of estrogen receptor signaling triggers epigenetic silencing of downstream targets in breast cancer”

Identifying estrogen receptor α target genes using integrated computational genomics and chromatin immunoprecipitation microarray

Victor X Jin, Yu-Wei Leu, Sandya Liyanarachchi, Hao Sun, Meiyun Fan, Kenneth P Nephew, Tim H-M Huang, Ramana V Davuluri

ORCID match Nucleic acids research · 2004 · Found in ORCID, PubMed

DOI: 10.1093/nar/gkh1005

Choose for “Identifying estrogen receptor α target genes using integrated computational genomics and chromatin immunoprecipitation microarray”

Epigenetic Profiling in Chronic Lymphocytic Leukemia Reveals Novel Methylation Targets

Laura J. Rush, Aparna Raval, Pauline Funchain, Amy J. Johnson, Lisa Smith, David Lucas, Melania M. Bembea, Te-Hui Liu, Nyla A. Heerema, Laura Z. Rassenti, Sandya Liyanarachchi, Ramana V. Davuluri, John C. Byrd, Christoph Plass

ORCID match Cancer research · 2004 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1158/0008-5472.can-03-2870

Choose for “Epigenetic Profiling in Chronic Lymphocytic Leukemia Reveals Novel Methylation Targets”

Acute myeloid leukemia with complex karyotypes and abnormal chromosome 21: Amplification discloses overexpression of APP, ETS2, and ERG genes

Claudia D. Baldus, Sandya Liyanarachchi, Krzysztof Mrózek, Herbert Auer, Stephan M. Tanner, Martin Guimond, Amy S. Ruppert, Nehad Mohamed, Ramana V. Davuluri, Michael A. Caligiuri, Clara D. Bloomfield, Albert de la Chapelle

ORCID match Proceedings of the National Academy of Sciences of the United States of America · 2004 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1073/pnas.0400272101

Choose for “Acute myeloid leukemia with complex karyotypes and abnormal chromosome 21: Amplification discloses overexpression of APP, ETS2, and ERG genes”

A NotI-EcoRV promoter library for studies of genetic and epigenetic alterations in mouse models of human malignancies.

Li Yu, Chunhui Liu, Kristi L. Bennett, Yue-Zhong Wu, Zunyan Dai, Jeffrey VanDeusen, René Opavský, Aparna Raval, Prashant Trikha, Ben Rodriguez, Brian Becknell, Charlene Mao, Stephen Lee, Ramana V. Davuluri, Gustavo Leone, Ignatia B. Van den Veyver, Michael A. Caligiuri, Christoph Plass

ORCID match Genomics · 2004 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1016/j.ygeno.2004.06.010

Choose for “A NotI-EcoRV promoter library for studies of genetic and epigenetic alterations in mouse models of human malignancies.”

Computer software to find genes in plant genomic DNA.

Ramana V. Davuluri, Michael Q. Zhang

ORCID match Methods in molecular biology (Clifton, N.J.) · 2003 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1385/1-59259-413-1:87

Choose for “Computer software to find genes in plant genomic DNA.”

AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors.

Ramana V. Davuluri, Hao Sun, Saranyan K. Palaniswamy, Nicole Matthews, Carlos Molina, Mike Kurtz, Erich Grotewold

ORCID match BMC bioinformatics · 2003 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1186/1471-2105-4-25

Choose for “AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors.”

Gene expression profiling of isogenic cells with different TP53 gene dosage reveals numerous genes that are affected by TP53 dosage and identifies CSPG2 as a direct target of p53

Heejei Yoon, Sandya Liyanarachchi, Fred A. Wright, Ramana V. Davuluri, Janet Lockman, Albert de la Chapelle, Natalia S. Pellegata

ORCID match Proceedings of the National Academy of Sciences of the United States of America · 2002 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1073/pnas.242597299

Choose for “Gene expression profiling of isogenic cells with different TP53 gene dosage reveals numerous genes that are affected by TP53 dosage and identifies CSPG2 as a direct target of p53”

Direct coupling of the cell cycle and cell death machinery by E2F.

Zaher Nahlé, Julia Polakoff, Ramana V. Davuluri, Mila E. McCurrach, Matthew D. Jacobson, Masashi Narita, Michael Q. Zhang, Yuri Lazebnik, Dafna Bar‐Sagi, Scott W. Lowe

ORCID match Nature cell biology · 2002 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1038/ncb868

Choose for “Direct coupling of the cell cycle and cell death machinery by E2F.”

Current Awareness

ORCID match Comparative and Functional Genomics · 2002 · Found in ORCID

DOI: 10.1002/cfg.116

Choose for “Current Awareness”

An AscI Boundary Library for the Studies of Genetic and Epigenetic Alterations in CpG Islands

Zunyan Dai, Dieter Weichenhan, Yue-Zhong Wu, Julia Hall, Laura J. Rush, Laura T. Smith, Aparna Raval, Li Yu, Daniela Kroll, J Muehlisch, Michael C. Frühwald, Peter J. de Jong, Joe Catanese, Ramana V. Davuluri, Dominic J. Smiraglia, Christoph Plass

ORCID match Genome research · 2002 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1101/gr.197402

Choose for “An AscI Boundary Library for the Studies of Genetic and Epigenetic Alterations in CpG Islands”

A Founding Locus within the RET Proto-Oncogene May Account for a Large Proportion of Apparently Sporadic Hirschsprung Disease and a Subset of Cases of Sporadic Medullary Thyroid Carcinoma

Salud Borrego, Fred A. Wright, Raquel M. Fernández, Nita Williams, Manuel López-Alonso, Ramana V. Davuluri, Guillermo Antiñolo, Charis Eng

ORCID match American journal of human genetics · 2002 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1086/345466

Choose for “A Founding Locus within the RET Proto-Oncogene May Account for a Large Proportion of Apparently Sporadic Hirschsprung Disease and a Subset of Cases of Sporadic Medullary Thyroid Carcinoma”

Identifying the 3'-terminal exon in human DNA.

Jack E. Tabaska, Ramana V. Davuluri, Michael Q. Zhang

ORCID match Bioinformatics (Oxford, England) · 2001 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1093/bioinformatics/17.7.602

Choose for “Identifying the 3'-terminal exon in human DNA.”

CART Classification of Human 5′ UTR Sequences

Ramana V. Davuluri

ORCID match Genome research · 2000 · Found in ORCID, OpenAlex, PubMed

DOI: 10.1101/gr.gr-1460r

Choose for “CART Classification of Human 5′ UTR Sequences”
You can try the radio buttons, but choices are not saved.